RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SCN4BQ8IWT1 228 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SPICE1Q8N0Z3 855 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TUBGCP2Q9BSJ2 902 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SELENONQ9NZV5 590 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 HMGXB4Q9UGU5 601 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 BAIAP2L1Q9UHR4 511 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DBNLQ9UJU6 430 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NRAPQ86VF7 1730 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 O00370 1275 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 BNIP3LO60238 219 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 UBTFL6P0CB48 400 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PIK3CGP48736 1102 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PPATQ06203 517 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FOXR1Q6PIV2 292 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SLC22A15Q8IZD6 547 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FBXL16Q8N461 479 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SSH3Q8TE77 659 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DPF2Q92785 391 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 HIC2Q96JB3 615 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TMX3Q96JJ7 454 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C2orf40Q9H1Z8 148 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PSTPIP2Q9H939 334 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C17orf75Q9HAS0 396 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MKL2Q9ULH7 1088 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SUFUQ9UMX1 484 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MAGEB2O15479 319 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SERPING1P05155 500 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 VIL1P09327 827 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RPIAP49247 311 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PDE1AP54750 535 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MFAP3P55082 362 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CHRNDQ07001 517 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PLEKHM3Q6ZWE6 761 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MOSPD2Q8NHP6 518 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 BHMTQ93088 406 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CATSPER2Q96P56 530 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RBBP8Q99708 897 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TUBB1Q9H4B7 451 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NOL6Q9H6R4 1146 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MAGEE1Q9HCI5 957 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SCN3BQ9NY72 215 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ZFP69BQ9UJL9 534 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DSEQ9UL01 958 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TBC1D3BA6NDS4 549 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MEIS2O14770 477 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ESRRAP11474 423 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ATF2P15336 505 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NLRP12P59046 1061 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 EXOSC10Q01780 885 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TSTA3Q13630 321 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RFX4Q33E94 735 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM259Q4ZIN3 620 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SPOPLQ6IQ16 392 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C16orf87Q6PH81 154 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RRM2BQ7LG56 351 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PEX5LQ8IYB4 626 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM145Q8NBT3 493 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SETD7Q8WTS6 366 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 AP3S1Q92572 193 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 KIAA1143Q96AT1 154 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SLITRK1Q96PX8 696 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MIR1-1HGQ9H1L0 117 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PALMDQ9NP74 551 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MRPL17Q9NRX2 175 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 KCTD5Q9NXV2 234 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TRIM10Q9UDY6 481 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FBXO10Q9UK96 956 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 STAP1Q9ULZ2 295 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 COL11A1P12107 1806 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PRR23D1E9PI22 279 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SUPT3HO75486 399 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 IGHDP01880 384 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PRR23D2P0DMB1 279 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TXNP10599 105 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 AP3S2P59780 193 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MRPS15P82914 257 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 WLSQ5T9L3 541 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PRPF38BQ5VTL8 546 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TRAPPC11Q7Z392 1133 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DSG4Q86SJ6 1040 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SETD9Q8NE22 299 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SEPT1Q8WYJ6 367 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SMARCAD1Q9H4L7 1026 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 IP6K2Q9UHH9 426 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 HAO1Q9UJM8 370 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 GUCA1BQ9UMX6 200 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 EPN1Q9Y6I3 576 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NDUFB9Q9Y6M9 179 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 STRCQ7RTU9 1775 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CACNA1SQ13698 1873 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NEURL1BA8MQ27 555 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MYO1CO00159 1063 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 REM1O75628 298 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TOM1L1O75674 476 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CTSEP14091 401 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 UQCRBP14927 111 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MSH2P43246 934 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ANO4Q32M45 955 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C6orf52Q5T4I8 152 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms