RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 SLC16A10Q8TF71 515 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 SPATA33Q96N06 139 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 TWNKQ96RR1 684 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 SMYD3Q9H7B4 428 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 DDX56Q9NY93 547 aaKnown RBP18.3■□□□□ 0.52
COL9A1-201ENST00000320755 EURLQ9NYK6 297 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 TCRBV7S3A2A0A539 114 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 GRAP2O75791 330 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 BASP1P80723 227 aaKnown RBP18.3■□□□□ 0.52
COL9A1-201ENST00000320755 SLC1A5Q15758 541 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 C3orf62Q6ZUJ4 267 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 ZC3H18Q86VM9 953 aaKnown RBP18.3■□□□□ 0.52
COL9A1-201ENST00000320755 ECHDC2Q86YB7 292 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 UNC45BQ8IWX7 931 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 FBXO16Q8IX29 292 aaPredicted RBP18.3■□□□□ 0.52
COL9A1-201ENST00000320755 GRID1Q9ULK0 1009 aa18.3■□□□□ 0.52
COL9A1-201ENST00000320755 DRG1Q9Y295 367 aaKnown RBP18.3■□□□□ 0.52
COL9A1-201ENST00000320755 NFICP08651 508 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 NQO1P15559 274 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 KRT4P19013 534 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 POLR2BP30876 1174 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MXD4Q14582 209 aaPredicted RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MTFR1Q15390 333 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 HHATQ5VTY9 493 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 EFCAB12Q6NXP0 572 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MPZL3Q6UWV2 235 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 RELL1Q8IUW5 271 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 OTUD5Q96G74 571 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 TTC25Q96NG3 672 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ALG13Q9NP73 1137 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ALOX15BO15296 676 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ITGB3P05106 788 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ITGAVP06756 1048 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ABHD2P08910 425 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MAP2K2P36507 400 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 YWHAEP62258 255 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 HADHQ16836 314 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 CDO1Q16878 200 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SH3PXD2AQ5TCZ1 1133 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MAK16Q9BXY0 300 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ZNF518BQ9C0D4 1074 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 RPF1Q9H9Y2 349 aaKnown RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 PCDH9Q9HC56 1237 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 PHTF1Q9UMS5 762 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SNCAIPQ9Y6H5 919 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MAP3K6O95382 1288 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 ERBB2P04626 1255 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 KRT16P08779 473 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 GPX6P59796 221 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MYO1EQ12965 1108 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 BNIP1Q12981 228 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 MMRN1Q13201 1228 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SPARCL1Q14515 664 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 RAB6CQ53S08 254 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 DRICH1Q6PGQ1 229 aaPredicted RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 CEP128Q6ZU80 1094 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SLC35B2Q8TB61 432 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 NKD2Q969F2 451 aaPredicted RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 GPR20Q99678 358 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 FOXP3Q9BZS1 431 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 RAB6CQ9H0N0 254 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SDCBP2Q9H190 292 aa18.29■□□□□ 0.52
COL9A1-201ENST00000320755 RGS17Q9UGC6 210 aaPredicted RBP18.29■□□□□ 0.52
COL9A1-201ENST00000320755 SIGLEC16A6NMB1 481 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 ZBTB42B2RXF5 422 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 ABLIM1O14639 778 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 ASMTLO95671 621 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 RPSAP08865 295 aaKnown RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 KDELR1P24390 212 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 RPL22P35268 128 aaKnown RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 AEBP2Q6ZN18 517 aaPredicted RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 RIOX2Q8IUF8 465 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 PALM2Q8IXS6 379 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 LRRN4Q8WUT4 740 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 CPT1BQ92523 772 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 RXFP1Q9HBX9 757 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 STRIP2Q9ULQ0 834 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 KAT6AQ92794 2004 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 C3orf70A6NLC5 250 aaPredicted RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 IQCF3P0C7M6 154 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 SLC25A11Q02978 314 aaKnown RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 SEPT7Q16181 437 aaKnown RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 GALNTL6Q49A17 601 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 GJC2Q5T442 439 aaPredicted RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 NPNTQ6UXI9 565 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 VSIG1Q86XK7 387 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 LRRC8CQ8TDW0 803 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 HEXIM2Q96MH2 286 aaKnown RBP18.28■□□□□ 0.52
COL9A1-201ENST00000320755 ELP3Q9H9T3 547 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 PRKAG3Q9UGI9 489 aa18.28■□□□□ 0.52
COL9A1-201ENST00000320755 M0QYV0 167 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 IRF6O14896 467 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 MIPP30301 263 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 RAD23BP54727 409 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 TAP1Q03518 808 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 FBXO36Q8NEA4 188 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 FAM167AQ96KS9 214 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 SIX4Q9UIU6 781 aa18.27■□□□□ 0.52
COL9A1-201ENST00000320755 PCDHGC3Q9UN70 934 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms