RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CKMP06732 381 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 LHX1P48742 406 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 NASPP49321 788 aaPredicted RBP13.69□□□□□ -0.22
CD44-203ENST00000278386 ARHGAP8P85298 464 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 SRSF5Q13243 272 aaKnown RBP13.69□□□□□ -0.22
CD44-203ENST00000278386 RUNX3Q13761 415 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 CCINQ13939 588 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 CEP68Q76N32 757 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 LONP2Q86WA8 852 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 TOP6BLQ8N6T0 577 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 GLIS3Q8NEA6 775 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 SPATA18Q8TC71 538 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 HPS3Q969F9 1004 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 DHX58Q96C10 678 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 LRRC27Q9C0I9 530 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 EBF3Q9H4W6 596 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 ABCB6Q9NP58 842 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 PARD6AQ9NPB6 346 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 HPS4Q9NQG7 708 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 TDP1Q9NUW8 608 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 GDAP2Q9NXN4 497 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 SIX4Q9UIU6 781 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 GTF3C4Q9UKN8 822 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 MYH10P35580 1976 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 PTPRJQ12913 1337 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 ZNF233A6NK53 670 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 K7ESF4 209 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 SPTLC2O15270 562 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 NOL4O94818 638 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 CLSTN1O94985 981 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 PAPSS2O95340 614 aaPredicted RBP13.68□□□□□ -0.22
CD44-203ENST00000278386 PSMC1P62191 440 aaKnown RBP13.68□□□□□ -0.22
CD44-203ENST00000278386 GRSF1Q12849 480 aaKnown RBP eCLIP13.68□□□□□ -0.22
CD44-203ENST00000278386 SURF1Q15526 300 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 FOXD4L5Q5VV16 416 aaPredicted RBP13.68□□□□□ -0.22
CD44-203ENST00000278386 SCARA3Q6AZY7 606 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 C4orf50Q6ZRC1 276 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 MON1AQ86VX9 555 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 CBWD2Q8IUF1 395 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 SYNPOQ8N3V7 929 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 LINC00301Q8NCQ3 95 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 OR5B17Q8NGF7 314 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 CXorf38Q8TB03 319 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 FOXD4L4Q8WXT5 416 aaPredicted RBP13.68□□□□□ -0.22
CD44-203ENST00000278386 HPDLQ96IR7 371 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 ZNF396Q96N95 335 aaPredicted RBP13.68□□□□□ -0.22
CD44-203ENST00000278386 SYT15Q9BQS2 421 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 INTS13Q9NVM9 706 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 C2orf42Q9NWW7 574 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 HSPBP1Q9NZL4 362 aa13.68□□□□□ -0.22
CD44-203ENST00000278386 TRAV19A0A0A6YYK7 116 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 EIF3DO15371 548 aaKnown RBP eCLIP13.67□□□□□ -0.22
CD44-203ENST00000278386 RETP07949 1114 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 ARSAP15289 507 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 CNR2P34972 360 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 IFNAR2P48551 515 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 AMPD3Q01432 767 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 AMPD2Q01433 879 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 ZNF268Q14587 947 aaPredicted RBP13.67□□□□□ -0.22
CD44-203ENST00000278386 KCNB1Q14721 858 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 MTF1Q14872 753 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 E2F4Q16254 413 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 SOWAHAQ2M3V2 549 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 CFAP221Q4G0U5 840 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 CPA6Q8N4T0 437 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 FSIP1Q8NA03 581 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 RIN3Q8TB24 985 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 MYLPFQ96A32 169 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 TRMT2BQ96GJ1 504 aaKnown RBP13.67□□□□□ -0.22
CD44-203ENST00000278386 FUBP3Q96I24 572 aaKnown RBP eCLIP13.67□□□□□ -0.22
CD44-203ENST00000278386 MMS19Q96T76 1030 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 PKMYT1Q99640 499 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 FAM83CQ9BQN1 747 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 TRIM9Q9C026 710 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 CUEDC2Q9H467 287 aa13.67□□□□□ -0.22
CD44-203ENST00000278386 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.67□□□□□ -0.22
CD44-203ENST00000278386 HRO43593 1189 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 RNF40O75150 1001 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 PPP6R2O75170 966 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 ATP2C2O75185 946 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 USP17L7P0C7H9 530 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 DLATP10515 647 aaKnown RBP13.66□□□□□ -0.22
CD44-203ENST00000278386 ANXA13P27216 316 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 CYP2J2P51589 502 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 CYP27A1Q02318 531 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 FAM160A1Q05DH4 1040 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 USP4Q13107 963 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 PDGFRLQ15198 375 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 DUOXA2Q1HG44 320 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 TMEM196Q5HYL7 178 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 FAM26FQ5R3K3 315 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 FSTL4Q6MZW2 842 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 PKN3Q6P5Z2 889 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 WDR5BQ86VZ2 330 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 WDR49Q8IV35 697 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 NELFCDQ8IXH7 590 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 RDH13Q8NBN7 331 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 KBTBD7Q8WVZ9 684 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 FNBP1Q96RU3 617 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 KIAA1586Q9HCI6 787 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms