RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GCNT1Q02742 428 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 UBXN1Q04323 297 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 ITIH3Q06033 890 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 DDR2Q16832 855 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 FKBP15Q5T1M5 1219 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 CES5AQ6NT32 575 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 C4orf50Q6ZRC1 276 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 STKLD1Q8NE28 680 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 GPR152Q8TDT2 470 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 SUSD6Q92537 303 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 TMEM176AQ96HP8 235 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 HEXIM2Q96MH2 286 aaKnown RBP13.58□□□□□ -0.24
SS18-202ENST00000269138 ZNF518BQ9C0D4 1074 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 FAM49BQ9NUQ9 324 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 TMEM30AQ9NV96 361 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 APEX2Q9UBZ4 518 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 GOLGA6L19H0YKK7 550 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 SLC34A2O95436 690 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 LRG1P02750 347 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 IL9P15248 144 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 ATF6P18850 670 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 TUFMP49411 452 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 MRPS5P82675 430 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 SYCP1Q15431 976 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 MAPRE1Q15691 268 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 ARHGAP44Q17R89 818 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 CFAP221Q4G0U5 840 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 ATAT1Q5SQI0 421 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 KLHDC7AQ5VTJ3 777 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 IQCEQ6IPM2 695 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 TMEM270Q6UE05 265 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 RTL10Q7L3V2 364 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 GRASPQ7Z6J2 395 aaPredicted RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 SCN4BQ8IWT1 228 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 FUKQ8N0W3 1084 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 TTC39CQ8N584 583 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 SLC2A14Q8TDB8 520 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 GIPC2Q8TF65 315 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 ATXN2LQ8WWM7 1075 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 FUBP3Q96I24 572 aaKnown RBP eCLIP13.57□□□□□ -0.24
SS18-202ENST00000269138 MED10Q9BTT4 135 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 PIDD1Q9HB75 910 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 ABCB6Q9NP58 842 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 RTN4Q9NQC3 1192 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 DNMT3BQ9UBC3 853 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 HSFX1Q9UBD0 423 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 DNAJC12Q9UKB3 198 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 SIK3Q9Y2K2 1263 aa13.57□□□□□ -0.24
SS18-202ENST00000269138 MTCL1Q9Y4B5 1905 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 SPTBN5Q9NRC6 3674 aaKnown RBP13.57□□□□□ -0.24
SS18-202ENST00000269138 XIRP2A4UGR9 3374 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 EPHB6O15197 1021 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 XYLBO75191 536 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 NOL4O94818 638 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 ADORA2BP29275 332 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 ALDH1A3P47895 512 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 MFAP3P55082 362 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 YWHAEP62258 255 aaKnown RBP13.56□□□□□ -0.24
SS18-202ENST00000269138 FANCCQ00597 558 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 FAM35AQ86V20 835 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.56□□□□□ -0.24
SS18-202ENST00000269138 HS6ST3Q8IZP7 471 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 ASB2Q96Q27 587 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 POMKQ9H5K3 350 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 FHOD1Q9Y613 1164 aa13.56□□□□□ -0.24
SS18-202ENST00000269138 A0A1B0GTH6 734 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 NRG2O14511 850 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 SERPINC1P01008 464 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 POU2F2P09086 479 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 PNMA6AP0CW24 399 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 BMP1P13497 986 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 KRT5P13647 590 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 MTHFRP42898 656 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 MAGEA11P43364 429 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 EPHB3P54753 998 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 TPM4P67936 248 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 MTMR3Q13615 1198 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 CBX2Q14781 532 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 SMAD2Q15796 467 aaKnown RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 AAK1Q2M2I8 961 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 PPP1R26Q5T8A7 1209 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 GAS2L3Q86XJ1 694 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 RBBP8NLQ8NC74 664 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 TFAP2BQ92481 460 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 CYFIP2Q96F07 1278 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 RIPOR3Q96MK2 946 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 ERGIC2Q96RQ1 377 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 HNRNPABQ99729 332 aaKnown RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 ZSWIM1Q9BR11 485 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 CORO1BQ9BR76 489 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 GANQ9H2C0 597 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 FAM124BQ9H5Z6 455 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 FAM207AQ9NSI2 230 aaPredicted RBP13.55□□□□□ -0.24
SS18-202ENST00000269138 CNTN6Q9UQ52 1028 aa13.55□□□□□ -0.24
SS18-202ENST00000269138 F8VP50 259 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 FOXN3O00409 490 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 BEST1O76090 585 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 UCHL3P15374 230 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 CD19P15391 556 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 GRIK1P39086 918 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms