RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PAX3P23760 479 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 CTXN3Q4LDR2 81 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SEPT5Q99719 369 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PAIP2Q9BPZ3 127 aaKnown RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 CNPY3Q9BT09 278 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 KRT82Q9NSB4 513 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 EHD2Q9NZN4 543 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 MAGED2Q9UNF1 606 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 RCCD1A6NED2 376 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 CALCAP01258 141 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SELPP16109 830 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 JAM2P57087 298 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PRPSAP1Q14558 356 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 UHMK1Q8TAS1 419 aaKnown RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PKNOX2Q96KN3 472 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 NKIRAS1Q9NYS0 192 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 A0A0U1RQJ8 604 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 ESYT3A0FGR9 886 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 RGS16O15492 202 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 PHF2O75151 1096 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 FECHP22830 423 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 CCL23P55773 120 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 ITKQ08881 620 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 LGSNQ5TDP6 509 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 SLC13A5Q86YT5 568 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 NOA1Q8NC60 698 aaKnown RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 ATL2Q8NHH9 583 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 ATRIPQ8WXE1 791 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 C18orf25Q96B23 403 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-201ENST00000254950 UROC1Q96N76 676 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 EPAS1Q99814 870 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 TLR10Q9BXR5 811 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 MED4Q9NPJ6 270 aa12.18□□□□□ -0.46
VPS4A-201ENST00000254950 LTBP1Q14766 1721 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 OAS2P29728 719 aaKnown RBP12.17□□□□□ -0.46
VPS4A-201ENST00000254950 GRIK3Q13003 919 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 IKBKEQ14164 716 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 NOMO2Q5JPE7 1267 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 C9orf57Q5W0N0 161 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 WSCD1Q658N2 575 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 CTAGE3PQ8IX95 158 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 EFCAB13Q8IY85 973 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 ELMOD1Q8N336 334 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 PPP1R14CQ8TAE6 165 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 SLC2A14Q8TDB8 520 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 FAM107BQ9H098 131 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 SIK2Q9H0K1 926 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 TUBGCP4Q9UGJ1 667 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 PHIPQ8WWQ0 1821 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 RBAK-RBAKDNI3L0D1 243 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 FBXO21O94952 628 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 MOCS2O96007 188 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-201ENST00000254950 GTF2F1P35269 517 aaKnown RBP eCLIP12.17□□□□□ -0.46
VPS4A-201ENST00000254950 DENND1BQ6P3S1 775 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 TAS1R3Q7RTX0 852 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 MMGT1Q8N4V1 131 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 EMC1Q8N766 993 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 TRMT13Q9NUP7 481 aaKnown RBP12.17□□□□□ -0.46
VPS4A-201ENST00000254950 BTNL10A8MVZ5 291 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 APOL1O14791 398 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 KRT15P19012 456 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 VEGFBP49765 207 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 KRT17Q04695 432 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 CASP8Q14790 479 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 SMTNL2Q2TAL5 461 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 GDF6Q6KF10 455 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-201ENST00000254950 TAOK1Q7L7X3 1001 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 PDIK1LQ8N165 341 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 C3orf20Q8ND61 904 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 SLC7A14Q8TBB6 771 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 RXFP2Q8WXD0 754 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 RUBCNQ92622 972 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 SNX27Q96L92 541 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 ISCUQ9H1K1 167 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 MAD1L1Q9Y6D9 718 aa12.17□□□□□ -0.46
VPS4A-201ENST00000254950 FER1L6Q2WGJ9 1857 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 NCAM1P13591 858 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 NOMO3P69849 1222 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 CAV1Q03135 178 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 MOGSQ13724 837 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 CAPN12Q6ZSI9 719 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 SLC24A5Q71RS6 500 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 LRRC8DQ7L1W4 858 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ZFP42Q96MM3 310 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 YME1L1Q96TA2 773 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 STRA6Q9BX79 667 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 HIPK3Q9H422 1215 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PPANQ9NQ55 473 aaKnown RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.16□□□□□ -0.464e-7■■■■□ 25.6
VPS4A-201ENST00000254950 SAMD15Q9P1V8 674 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 MAP3K7CLP57077 242 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 COG7P83436 770 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ITIH3Q06033 890 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 TUSC3Q13454 348 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PPP2R5DQ14738 602 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ZDHHC17Q8IUH5 632 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 CDKL3Q8IVW4 592 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 SLITRK1Q96PX8 696 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PRRG1O14668 218 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms