RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 LRP3O75074 770 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 TADA3O75528 432 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 F11P03951 625 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 NLRP12P59046 1061 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 ARHGAP8P85298 464 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 TNK2Q07912 1038 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 PPP2R5DQ14738 602 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 VEPH1Q14D04 833 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 POSTNQ15063 836 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 MGAT5BQ3V5L5 792 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 SV2CQ496J9 727 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 ARHGAP15Q53QZ3 475 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 SCARA3Q6AZY7 606 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 DYMQ7RTS9 669 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 LIMS2Q7Z4I7 341 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 CMTM8Q8IZV2 173 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 SYNPOQ8N3V7 929 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 CELF5Q8N6W0 485 aaKnown RBP11.11□□□□□ -0.63
VPS50-201ENST00000251739 LRRC52Q8N7C0 313 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 C1orf127Q8N9H9 656 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 RIN3Q8TB24 985 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 POMGNT1Q8WZA1 660 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 ZNF560Q96MR9 790 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 CLIC6Q96NY7 704 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 HPS4Q9NQG7 708 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 L1RE1Q9UN81 338 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 CHD6Q8TD26 2715 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 VPS37CA5D8V6 355 aaPredicted RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 PDCP20941 246 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 SDHBP21912 280 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 GARTP22102 1010 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 HOXC13P31276 330 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 PNPLA4P41247 253 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 CDR1P51861 262 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 KPNA1P52294 538 aaPredicted RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 ITPRIPL2Q3MIP1 535 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 FAM173BQ6P4H8 233 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 METTL23Q86XA0 190 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 DCP1BQ8IZD4 617 aaKnown RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 THEM5Q8N1Q8 247 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 PDCL2Q8N4E4 241 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 SPATA18Q8TC71 538 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 USP13Q92995 863 aaPredicted RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 SECISBP2LQ93073 1101 aaKnown RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 SAAL1Q96ER3 474 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 FAM84AQ96KN4 292 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 ACCSQ96QU6 501 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 SMG9Q9H0W8 520 aaKnown RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 UPF2Q9HAU5 1272 aaKnown RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 ABCB6Q9NP58 842 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 GDAP2Q9NXN4 497 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 ABI2Q9NYB9 513 aaPredicted RBP11.1□□□□□ -0.63
VPS50-201ENST00000251739 CCDC39Q9UFE4 941 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 SIX4Q9UIU6 781 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 GMEB2Q9UKD1 530 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 CCL26Q9Y258 94 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 PCDHB5Q9Y5E4 795 aa11.1□□□□□ -0.63
VPS50-201ENST00000251739 OTOL1A6NHN0 477 aaPredicted RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 CHURC1-FNTBB4DL54 471 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 NOL4O94818 638 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 RETP07949 1114 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 SYT1P21579 422 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 DDX6P26196 483 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS50-201ENST00000251739 POLR2BP30876 1174 aaKnown RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 CNR2P34972 360 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 FNTBP49356 437 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 GPR15P49685 360 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 ATXN1P54253 815 aaKnown RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 ALCAMQ13740 583 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 ZNF268Q14587 947 aaPredicted RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 PON2Q15165 354 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 NFE2Q16621 373 aaPredicted RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 CCDC142Q17RM4 750 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 TMEM196Q5HYL7 178 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 INTS6LQ5JSJ4 861 aaKnown RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 RRAGBQ5VZM2 374 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 PKN3Q6P5Z2 889 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 SV2BQ7L1I2 683 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 MON1AQ86VX9 555 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 LONP2Q86WA8 852 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 OSTM1Q86WC4 334 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 TMEM86AQ8N2M4 240 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 TTC8Q8TAM2 541 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 FAM200AQ8TCP9 573 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 GIPC2Q8TF65 315 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 TRMT2BQ96GJ1 504 aaKnown RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 MYRFLQ96LU7 910 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 GCNAQ96QF7 691 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 USP28Q96RU2 1077 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 ACBD6Q9BR61 282 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 CBWD1Q9BRT8 395 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 FAM213AQ9BRX8 229 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 KIF9Q9HAQ2 790 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 RBAKQ9NYW8 714 aaPredicted RBP11.09□□□□□ -0.63
VPS50-201ENST00000251739 TBC1D7Q9P0N9 293 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 ITGA11Q9UKX5 1188 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 EXOC7Q9UPT5 735 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 NUP205Q92621 2012 aa11.09□□□□□ -0.63
VPS50-201ENST00000251739 PTPRJQ12913 1337 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms