RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CCDC89Q8N998 374 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 EXD1Q8NHP7 514 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PRPF31Q8WWY3 499 aaKnown RBP11.24□□□□□ -0.61
USP28-201ENST00000003302 HSPH1Q92598 858 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 COPS5Q92905 334 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 SENP7Q9BQF6 1050 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 SMYD2Q9NRG4 433 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 SCN1AP35498 2009 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 E2F8A0AVK6 867 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 ZNF132P52740 706 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 BMPR2Q13873 1038 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 VSIG1Q86XK7 387 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 C12orf29Q8N999 325 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 DTX3LQ8TDB6 740 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 MMP19Q99542 508 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 XYLT2Q9H1B5 865 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 EHMT1Q9H9B1 1298 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 NKIRAS1Q9NYS0 192 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 KLHL14Q9P2G3 628 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 MFHAS1Q9Y4C4 1052 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 SPDYE5A6NIY4 337 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 DGAT1O75907 488 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 ERBB2P04626 1255 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PHKA2P46019 1235 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 CDO1Q16878 200 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 CYP4V2Q6ZWL3 525 aaPredicted RBP11.24□□□□□ -0.61
USP28-201ENST00000003302 LONP2Q86WA8 852 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 UBR7Q8N806 425 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PAFAH2Q99487 392 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 GINM1Q9NU53 330 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 SPEGQ15772 3267 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 TNS1Q9HBL0 1735 aaKnown RBP11.24□□□□□ -0.61
USP28-201ENST00000003302 ATG7O95352 703 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 TGFB2P61812 414 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 KBTBD12Q3ZCT8 623 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 WDR44Q5JSH3 913 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 DCUN1D2Q6PH85 259 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PHF13Q86YI8 300 aaPredicted RBP11.24□□□□□ -0.61
USP28-201ENST00000003302 UBA3Q8TBC4 463 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 TCHPQ9BT92 498 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 HACL1Q9UJ83 578 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PSME4Q14997 1843 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 CCDC195A0A1B0GUA6 201 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 FAM237BA0A1B0GVD1 139 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CFAP69A5D8W1 941 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 TBC1D12O60347 775 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 TCEA3O75764 348 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 SERPINB3P29508 390 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 MAP3K10Q02779 954 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 OLIG2Q13516 323 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ISLR2Q6UXK2 745 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ZCCHC23Q6ZST2 131 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 NIPA1Q7RTP0 329 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 SLC35B2Q8TB61 432 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 FAM111AQ96PZ2 611 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 LRRC37BQ96QE4 947 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 WRNIP1Q96S55 665 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 DHX33Q9H6R0 707 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 SMYD3Q9H7B4 428 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CCDC189A1A4V9 331 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ABLIM1O14639 778 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 MSCO60682 206 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 TPBGLP0DKB5 382 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CYP3A5P20815 502 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 BGNP21810 368 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 GARTP22102 1010 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ASPAP45381 313 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 JAK3P52333 1124 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 VCPP55072 806 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 TREML2Q5T2D2 321 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 DEFB132Q7Z7B7 95 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 KCTD17Q8N5Z5 321 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 DCAKDQ8WVC6 231 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CADM1Q9BY67 442 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 A0A0C4DFX4 3053 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PSTPIP1O43586 416 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ASS1P00966 412 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 GNAZP19086 355 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PSEN1P49768 467 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 IRX4P78413 519 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 BASP1P80723 227 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 GHRHRQ02643 423 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 RIPK1Q13546 671 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PDK4Q16654 411 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 NAIF1Q69YI7 327 aaPredicted RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 ARHGEF18Q6ZSZ5 1173 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 NLRP9Q7RTR0 991 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 APBB1IPQ7Z5R6 666 aaPredicted RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 CLNKQ7Z7G1 428 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 KBTBD2Q8IY47 623 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 NAT8LQ8N9F0 302 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 MORC4Q8TE76 937 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PORCNQ9H237 461 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 WASF2Q9Y6W5 498 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 ANK1P16157 1881 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 KRT36O76013 467 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PGK2P07205 417 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CXCL8P10145 99 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms