RNA–Protein interactions for RNA: YPR001W

CIT3, Transcript of Dual specificity mitochondrial citrate and methylcitrate synthase, yeast

Gene CIT3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CIT3	YPR001W	YGL230C	P53074	147 aa		4.72	□□□□□ -1.65
CIT3	YPR001W	SAY1	P53324	424 aa		4.72	□□□□□ -1.65
CIT3	YPR001W	YOR381W-A	Q3E804	55 aa		4.72	□□□□□ -1.65
CIT3	YPR001W	RPO31	P04051	1460 aa		4.71	□□□□□ -1.65
CIT3	YPR001W	SCM4	P32564	187 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	TVP23	P38962	199 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	MPM1	P40364	252 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	TMC1	Q08422	150 aa	Predicted RBP	4.71	□□□□□ -1.66
CIT3	YPR001W	SSK2	P53599	1579 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	NUP159	P40477	1460 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	ESP1	Q03018	1630 aa		4.71	□□□□□ -1.66
CIT3	YPR001W	YOL162W	P0CF19	215 aa		4.7	□□□□□ -1.66
CIT3	YPR001W	YCR050C	P25630	102 aa		4.7	□□□□□ -1.66
CIT3	YPR001W	MRPS9	P38120	278 aa		4.7	□□□□□ -1.66
CIT3	YPR001W	RPL33B	P41056	107 aa	Known RBP	4.7	□□□□□ -1.66
CIT3	YPR001W	YNR077C	P53758	84 aa		4.7	□□□□□ -1.66
CIT3	YPR001W	DDP1	Q99321	188 aa	Known RBP	4.7	□□□□□ -1.66
CIT3	YPR001W	MET5	P47169	1442 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	UTH1	P36135	365 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	ATG40	Q99325	256 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	PDR5	P33302	1511 aa	Known RBP	4.69	□□□□□ -1.66
CIT3	YPR001W	RPS23A	P0CX29	145 aa	Known RBP	4.69	□□□□□ -1.66
CIT3	YPR001W	RPS23B	P0CX30	145 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	CSI2	Q08054	341 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	UIP4	Q08926	304 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	OCA6	Q12454	224 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	SCS22	Q6Q595	175 aa		4.69	□□□□□ -1.66
CIT3	YPR001W	FAS1	P07149	2051 aa	Known RBP	4.68	□□□□□ -1.66
CIT3	YPR001W	RAS2	P01120	322 aa	Known RBP	4.68	□□□□□ -1.66
CIT3	YPR001W	RTR2	Q12378	196 aa		4.68	□□□□□ -1.66
CIT3	YPR001W	POL1	P13382	1468 aa		4.67	□□□□□ -1.66
CIT3	YPR001W	GAA1	P39012	614 aa		4.67	□□□□□ -1.66
CIT3	YPR001W	LSM8	P47093	109 aa	Known RBP	4.67	□□□□□ -1.66
CIT3	YPR001W	YDR114C	Q04597	100 aa		4.67	□□□□□ -1.66
CIT3	YPR001W	FLX1	P40464	311 aa		4.66	□□□□□ -1.66
CIT3	YPR001W	ATP19	P81451	68 aa		4.66	□□□□□ -1.66
CIT3	YPR001W	ROM2	P51862	1356 aa	Known RBP	4.66	□□□□□ -1.66
CIT3	YPR001W	SDH4	P37298	181 aa		4.65	□□□□□ -1.66
CIT3	YPR001W	YAE1	P47118	141 aa	Predicted RBP	4.65	□□□□□ -1.66
CIT3	YPR001W	DAD3	P69850	94 aa		4.65	□□□□□ -1.66
CIT3	YPR001W	YMR252C	Q04814	134 aa		4.65	□□□□□ -1.66
CIT3	YPR001W	YOR015W	Q12169	119 aa		4.65	□□□□□ -1.66
CIT3	YPR001W	YCF1	P39109	1515 aa	Known RBP	4.65	□□□□□ -1.67
CIT3	YPR001W	BPT1	P14772	1559 aa		4.65	□□□□□ -1.67
CIT3	YPR001W	HAP2	P06774	265 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	YAL064W	P39711	94 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	YIL059C	P40520	121 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	TIR3	P40552	269 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	BOL2	P53082	120 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	THG1	P53215	237 aa	Known RBP	4.64	□□□□□ -1.67
CIT3	YPR001W	PIR1	Q03178	341 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	DML1	Q03652	475 aa		4.64	□□□□□ -1.67
CIT3	YPR001W	YOR097C	Q12274	175 aa	Predicted RBP	4.64	□□□□□ -1.67
CIT3	YPR001W	YLR236C	A0A023PZG4	107 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	YAR029W	P39549	74 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	YIR035C	P40579	254 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	MPC1	P53157	130 aa	Known RBP	4.63	□□□□□ -1.67
CIT3	YPR001W	UPS3	Q04006	179 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	FEX1	Q08913	375 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	FEX2	Q08991	375 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	YKL068W-A	Q3E826	78 aa		4.63	□□□□□ -1.67
CIT3	YPR001W	ARO1	P08566	1588 aa	Known RBP	4.63	□□□□□ -1.67
CIT3	YPR001W	MIG1	P27705	504 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	YBR090C	P38253	122 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	YER084W	P40057	128 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	CIS3	P47001	227 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	YJL027C	P47063	138 aa	Predicted RBP	4.62	□□□□□ -1.67
CIT3	YPR001W	UPS1	Q05776	175 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	IQG1	Q12280	1495 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	RPL26A	P05743	127 aa	Known RBP	4.62	□□□□□ -1.67
CIT3	YPR001W	INO4	P13902	151 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	RPL26B	P53221	127 aa	Known RBP	4.62	□□□□□ -1.67
CIT3	YPR001W	YPR013C	Q12145	317 aa		4.62	□□□□□ -1.67
CIT3	YPR001W	TMA19	P35691	167 aa	Known RBP	4.61	□□□□□ -1.67
CIT3	YPR001W	YHL042W	P38729	150 aa		4.61	□□□□□ -1.67
CIT3	YPR001W	NSE4	P43124	402 aa		4.61	□□□□□ -1.67
CIT3	YPR001W	GNA1	P43577	159 aa	Predicted RBP	4.61	□□□□□ -1.67
CIT3	YPR001W	DIE2	P50076	525 aa		4.61	□□□□□ -1.67
CIT3	YPR001W	ATG41	Q12048	136 aa		4.61	□□□□□ -1.67
CIT3	YPR001W	ESC1	Q03661	1658 aa	Known RBP	4.61	□□□□□ -1.67
CIT3	YPR001W	KOG1	P38873	1557 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	CAT8	P39113	1433 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	CLB6	P32943	380 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	YBR209W	P38311	105 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	PAM16	P42949	149 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	YML079W	Q03629	201 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	HIR3	P47171	1648 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	ATG2	P53855	1592 aa		4.6	□□□□□ -1.67
CIT3	YPR001W	GEA2	P39993	1459 aa	Known RBP	4.6	□□□□□ -1.67
CIT3	YPR001W	ERV15	P38312	142 aa		4.59	□□□□□ -1.67
CIT3	YPR001W	MZM1	Q03429	123 aa	Predicted RBP	4.59	□□□□□ -1.67
CIT3	YPR001W	RCE1	Q03530	315 aa		4.59	□□□□□ -1.67
CIT3	YPR001W	CUE4	Q04201	117 aa	Predicted RBP	4.59	□□□□□ -1.67
CIT3	YPR001W	YOR385W	Q08909	290 aa		4.59	□□□□□ -1.67
CIT3	YPR001W	YOR376W-A	Q3E805	51 aa		4.59	□□□□□ -1.67
CIT3	YPR001W	ADE6	P38972	1358 aa	Known RBP	4.58	□□□□□ -1.68
CIT3	YPR001W	SNQ2	P32568	1501 aa	Known RBP	4.58	□□□□□ -1.68
CIT3	YPR001W	GDB1	Q06625	1536 aa		4.58	□□□□□ -1.68
CIT3	YPR001W	SRL3	P36167	246 aa		4.58	□□□□□ -1.68
CIT3	YPR001W	BAT2	P47176	376 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms