RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	SSU72	P53538	206 aa	Predicted RBP	3.37	□□□□□ -1.87
RRP40	YOL142W	PRR2	Q12310	699 aa		3.37	□□□□□ -1.87
RRP40	YOL142W	YHR213W-A	Q8TGT4	77 aa		3.37	□□□□□ -1.87
RRP40	YOL142W	FCY2	P17064	533 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	YPS1	P32329	569 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	YPT31	P38555	223 aa	Known RBP	3.36	□□□□□ -1.87
RRP40	YOL142W	YAR068W	P39564	161 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	NSA2	P40078	261 aa	Known RBP	3.36	□□□□□ -1.87
RRP40	YOL142W	YGR269W	P40326	108 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	SWM2	P40342	146 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	VPS55	P47111	140 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	YGR219W	P53307	113 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	MRPL50	P53724	139 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	PDR17	P53844	350 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	DID2	P69771	204 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	IRC23	Q08416	157 aa		3.36	□□□□□ -1.87
RRP40	YOL142W	MRPL38	P35996	138 aa	Predicted RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	RTC3	P38804	111 aa	Predicted RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	ASP1	P38986	381 aa	Predicted RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	GCV3	P39726	170 aa	Predicted RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	YEA4	P40004	342 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	ERG25	P53045	309 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	JAC1	P53193	184 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	HST4	P53688	370 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	YHP1	Q04116	353 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	HOR7	Q05827	59 aa		3.35	□□□□□ -1.87
RRP40	YOL142W	BER1	Q06688	274 aa	Known RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	MRPL23	Q12487	163 aa	Predicted RBP	3.35	□□□□□ -1.87
RRP40	YOL142W	PET494	P07390	489 aa	Predicted RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	RPS25B	P0C0T4	108 aa	Known RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	UBI4	P0CG63	381 aa	Known RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	MAG1	P22134	296 aa	Known RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	AHT1	P29589	182 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	HMX1	P32339	317 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	FPR2	P32472	135 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	UPS2	P35200	230 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	YBL071C	P38185	102 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	MIC12	P38341	106 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	DOG2	P38773	246 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	DOG1	P38774	246 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	VMA22	P38784	181 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	BDH1	P39714	382 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	YNL194C	P40169	301 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	AGE2	P40529	298 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	YLR179C	Q06252	201 aa	Known RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	AGC1	Q12482	902 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	RPS25A	Q3E792	108 aa	Predicted RBP	3.34	□□□□□ -1.87
RRP40	YOL142W	YGR035W-A	Q45U48	73 aa		3.34	□□□□□ -1.87
RRP40	YOL142W	YKL075C	P36083	450 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	CSH1	P38287	376 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	GLE2	P40066	365 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	YCH1	P42937	148 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	RPA43	P46669	326 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	YJL027C	P47063	138 aa	Predicted RBP	3.33	□□□□□ -1.88
RRP40	YOL142W	YJR015W	P47090	510 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	TOS8	P53147	276 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	SWT21	P53873	357 aa	Predicted RBP	3.33	□□□□□ -1.88
RRP40	YOL142W	MRPS17	Q03246	237 aa	Predicted RBP	3.33	□□□□□ -1.88
RRP40	YOL142W	PLP1	Q04004	230 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	COA4	Q05809	96 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	YPR195C	Q06594	109 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	FCF2	Q12035	217 aa	Predicted RBP	3.33	□□□□□ -1.88
RRP40	YOL142W	PAA1	Q12447	191 aa	Known RBP	3.33	□□□□□ -1.88
RRP40	YOL142W	FMP16	Q12497	93 aa		3.33	□□□□□ -1.88
RRP40	YOL142W	SHB17	P36136	271 aa	Known RBP	3.32	□□□□□ -1.88
RRP40	YOL142W	RRT1	P38192	103 aa		3.32	□□□□□ -1.88
RRP40	YOL142W	CPD1	P53314	239 aa		3.32	□□□□□ -1.88
RRP40	YOL142W	YMR316C-A	I2HB70	103 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	CDC7	P06243	507 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	QCR9	P22289	66 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	IMP2	P46972	177 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	SNX4	P47057	423 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	MIC27	P50945	234 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	UBC12	P52491	188 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	CAB4	P53332	305 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	YNR066C	P53752	436 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	YMR007W	Q03675	126 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	AVO2	Q04749	426 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	CTR3	Q06686	241 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	YPR013C	Q12145	317 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	ATP14	Q12349	124 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	COX19	Q3E731	98 aa		3.31	□□□□□ -1.88
RRP40	YOL142W	YHR213W	P0CI67	198 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	YHR212W-A	P0CX91	67 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	SPO13	P23624	291 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	UTR5	P32630	166 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	DER1	P38307	211 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	YBR292C	P38357	123 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	PET100	P38958	111 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	VMA7	P39111	118 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	SPC25	P40014	221 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	EMC5	P40540	141 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	RIB4	P50861	169 aa	Predicted RBP	3.3	□□□□□ -1.88
RRP40	YOL142W	ORM1	P53224	222 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	YCL001W-A	P87012	153 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	VPS71	Q03433	280 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	SHH3	Q04487	196 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	PRM3	Q08931	133 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	YOR015W	Q12169	119 aa		3.3	□□□□□ -1.88
RRP40	YOL142W	SNU13	P39990	126 aa	Known RBP	3.29	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 194.6 ms