RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	YBL058W	CCW12	Q12127	133 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	ISN1	Q99312	450 aa		4.19	□□□□□ -1.74
SHP1	YBL058W	VMA16	P23968	213 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	NPL6	P32832	435 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	YBR242W	P38331	238 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	SWM2	P40342	146 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	PKP2	P53170	491 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	BOR1	P53838	576 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	YLR146W-A	Q2V2P1	62 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	YCR075W-A	Q3E830	75 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	YER175W-A	Q8TGU4	54 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	YBR126W-A	Q8TGU7	68 aa		4.18	□□□□□ -1.74
SHP1	YBL058W	DDI2	P0CH63	225 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	DDI3	P0CH64	225 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	PET100	P38958	111 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YEA6	P39953	335 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YNL200C	P40165	246 aa	Known RBP	4.17	□□□□□ -1.74
SHP1	YBL058W	YMR082C	Q04276	118 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	ERP1	Q05359	219 aa	Known RBP	4.17	□□□□□ -1.74
SHP1	YBL058W	CTR3	Q06686	241 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	PRR2	Q12310	699 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YPR145C-A	Q2V2P0	78 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YHR213W-A	Q8TGT4	77 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YOL085C	Q99345	113 aa		4.17	□□□□□ -1.74
SHP1	YBL058W	YHR022C	P38763	256 aa		4.16	□□□□□ -1.74
SHP1	YBL058W	VHS2	P40463	436 aa		4.16	□□□□□ -1.74
SHP1	YBL058W	SNO1	Q03144	224 aa		4.16	□□□□□ -1.74
SHP1	YBL058W	ERV2	Q12284	196 aa		4.16	□□□□□ -1.74
SHP1	YBL058W	YDR157W	A0A023PZE8	133 aa		4.15	□□□□□ -1.75
SHP1	YBL058W	GCN3	P14741	305 aa		4.15	□□□□□ -1.75
SHP1	YBL058W	EMP24	P32803	203 aa	Known RBP	4.15	□□□□□ -1.75
SHP1	YBL058W	YMR007W	Q03675	126 aa		4.15	□□□□□ -1.75
SHP1	YBL058W	YLR302C	O13544	120 aa		4.14	□□□□□ -1.75
SHP1	YBL058W	TAL1	P15019	335 aa	Known RBP	4.14	□□□□□ -1.75
SHP1	YBL058W	DER1	P38307	211 aa		4.14	□□□□□ -1.75
SHP1	YBL058W	SDH8	P38345	138 aa		4.14	□□□□□ -1.75
SHP1	YBL058W	MBB1	P39534	108 aa		4.14	□□□□□ -1.75
SHP1	YBL058W	MRPS16	Q02608	121 aa		4.14	□□□□□ -1.75
SHP1	YBL058W	YLR179C	Q06252	201 aa	Known RBP	4.14	□□□□□ -1.75
SHP1	YBL058W	YBL059W	P34224	193 aa		4.13	□□□□□ -1.75
SHP1	YBL058W	IRC22	P40006	225 aa		4.13	□□□□□ -1.75
SHP1	YBL058W	YJR111C	P47148	283 aa	Known RBP	4.13	□□□□□ -1.75
SHP1	YBL058W	YDL242W	Q07746	117 aa		4.13	□□□□□ -1.75
SHP1	YBL058W	RPB3	P16370	318 aa	Known RBP	4.12	□□□□□ -1.75
SHP1	YBL058W	MRPL4	P36517	319 aa		4.12	□□□□□ -1.75
SHP1	YBL058W	SPC1	P46965	94 aa		4.12	□□□□□ -1.75
SHP1	YBL058W	PNC1	P53184	216 aa	Known RBP	4.12	□□□□□ -1.75
SHP1	YBL058W	DID2	P69771	204 aa		4.12	□□□□□ -1.75
SHP1	YBL058W	YGR240C-A	Q3E786	66 aa		4.12	□□□□□ -1.75
SHP1	YBL058W	RPS2	P25443	254 aa	Known RBP	4.11	□□□□□ -1.75
SHP1	YBL058W	CDC50	P25656	391 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	ACP1	P32463	125 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	HUA1	P40325	198 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	DSK2	P48510	373 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	TMA23	Q03525	211 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	AVO2	Q04749	426 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	BER1	Q06688	274 aa	Known RBP	4.11	□□□□□ -1.75
SHP1	YBL058W	LCL2	Q08045	131 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	CRC1	Q12289	327 aa		4.11	□□□□□ -1.75
SHP1	YBL058W	VAR1	P02381	398 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	MRP2	P10663	115 aa	Predicted RBP	4.1	□□□□□ -1.75
SHP1	YBL058W	ANB1	P19211	157 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	MRPL20	P22354	195 aa	Predicted RBP	4.1	□□□□□ -1.75
SHP1	YBL058W	SPO13	P23624	291 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	YEA4	P40004	342 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	YCH1	P42937	148 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	YPS5	P53057	165 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	MRX11	Q03079	207 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	FIT2	Q08906	153 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	ATX2	Q12067	313 aa		4.1	□□□□□ -1.75
SHP1	YBL058W	ERG27	Q12452	347 aa	Known RBP	4.1	□□□□□ -1.75
SHP1	YBL058W	CUP2	P15315	225 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	CPT1	P17898	393 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	QCR9	P22289	66 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	AHT1	P29589	182 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	SPI1	P40092	148 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	COA4	Q05809	96 aa		4.09	□□□□□ -1.75
SHP1	YBL058W	HTB2	P02294	131 aa		4.08	□□□□□ -1.76
SHP1	YBL058W	CKS1	P20486	150 aa	Known RBP	4.08	□□□□□ -1.76
SHP1	YBL058W	HSP12	P22943	109 aa	Known RBP	4.08	□□□□□ -1.76
SHP1	YBL058W	TOM7	P53507	60 aa		4.08	□□□□□ -1.76
SHP1	YBL058W	ATP23	P53722	227 aa		4.08	□□□□□ -1.76
SHP1	YBL058W	YMR253C	Q04835	414 aa		4.08	□□□□□ -1.76
SHP1	YBL058W	YPL229W	Q99395	206 aa		4.08	□□□□□ -1.76
SHP1	YBL058W	Q0255	P03881	472 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	YMR141C	P40211	102 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	YGL117W	P53133	265 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	MRPL50	P53724	139 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	ATC1	Q04005	294 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	ORM2	Q06144	216 aa		4.07	□□□□□ -1.76
SHP1	YBL058W	MRS1	P07266	363 aa		4.06	□□□□□ -1.76
SHP1	YBL058W	ACB1	P31787	87 aa		4.06	□□□□□ -1.76
SHP1	YBL058W	TRS20	P38334	175 aa		4.06	□□□□□ -1.76
SHP1	YBL058W	RRT13	P40042	185 aa		4.06	□□□□□ -1.76
SHP1	YBL058W	RIB4	P50861	169 aa	Predicted RBP	4.06	□□□□□ -1.76
SHP1	YBL058W	YDR366C	P87287	132 aa		4.06	□□□□□ -1.76
SHP1	YBL058W	FCF2	Q12035	217 aa	Predicted RBP	4.06	□□□□□ -1.76
SHP1	YBL058W	ASP1	P38986	381 aa	Predicted RBP	4.05	□□□□□ -1.76
SHP1	YBL058W	CDC40	P40968	455 aa	Predicted RBP	4.05	□□□□□ -1.76
SHP1	YBL058W	RAV2	Q03956	351 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 70.4 ms