RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 LCLAT1Q6UWP7 414 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 XYLT1Q86Y38 959 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 ZBTB9Q96C00 473 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 PKNOX2Q96KN3 472 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 CPXM1Q96SM3 734 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 MTG1Q9BT17 334 aaPredicted RBP23.31■■□□□ 1.32
PNKP-220ENST00000627232 MIS12Q9H081 205 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 UPF3AQ9H1J1 476 aaKnown RBP23.31■■□□□ 1.32
PNKP-220ENST00000627232 NXF3Q9H4D5 531 aaKnown RBP23.31■■□□□ 1.32
PNKP-220ENST00000627232 GRHL1Q9NZI5 618 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 SNX24Q9Y343 169 aa23.31■■□□□ 1.32
PNKP-220ENST00000627232 M0QYV0 167 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 PPFIA2O75334 1257 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 RALAP11233 206 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 KCNE1P15382 129 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 PTPN7P35236 360 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 RPL21P46778 160 aaKnown RBP23.3■■□□□ 1.32
PNKP-220ENST00000627232 NKX3-2P78367 333 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 UBXN11Q5T124 520 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 POLNQ7Z5Q5 900 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 MCRS1Q96EZ8 462 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 HHIPL1Q96JK4 782 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 TXLNGYQ9BZA5 131 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 SCN10AQ9Y5Y9 1956 aa23.3■■□□□ 1.32
PNKP-220ENST00000627232 F8VP50 259 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 FLT3P36888 993 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 PDCLQ13371 301 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 UAP1Q16222 522 aaPredicted RBP23.29■■□□□ 1.32
PNKP-220ENST00000627232 CCNG2Q16589 344 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 C9orf57Q5W0N0 161 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 ZDHHC24Q6UX98 284 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 C1orf54Q8WWF1 131 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 HERPUD2Q9BSE4 406 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 CXCL16Q9H2A7 254 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 SYNCQ9H7C4 482 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 TUBGCP4Q9UGJ1 667 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 PLAAQ9Y263 795 aa23.29■■□□□ 1.32
PNKP-220ENST00000627232 GOLGA6CA6NDK9 693 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 GOLGA8SH3BPF8 625 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 ERBB2P04626 1255 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 C6orf222P0C671 652 aaPredicted RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 GOLGA6DP0CG33 693 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 RFC1P35251 1148 aaPredicted RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 KCNJ1P48048 391 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 DHX9Q08211 1270 aaKnown RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 NFX1Q12986 1120 aaKnown RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 ACAP1Q15027 740 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 UNC93AQ86WB7 457 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 IPO4Q8TEX9 1081 aaKnown RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 SLITRK1Q96PX8 696 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 CHST7Q9NS84 486 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 GOLGA6AQ9NYA3 693 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 MTRF1LQ9UGC7 380 aaKnown RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 HES2Q9Y543 173 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 KRT1P04264 644 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 CYP3A5P20815 502 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 PSMA2P25787 234 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 GJC1P36383 396 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 PTK6Q13882 451 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 PPP1R7Q15435 360 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 ZNF771Q7L3S4 317 aaPredicted RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 ATL2Q8NHH9 583 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 FAM76AQ8TAV0 307 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 C18orf25Q96B23 403 aaPredicted RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 ZNF560Q96MR9 790 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 MRPL45Q9BRJ2 306 aaKnown RBP23.28■■□□□ 1.32
PNKP-220ENST00000627232 SNX9Q9Y5X1 595 aa23.28■■□□□ 1.32
PNKP-220ENST00000627232 SMIM28A0A1B0GU29 152 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 MYADML2A6NDP7 307 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 H0YGN5 161 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 PIRO00625 290 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 PPEF2O14830 753 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 GAS8O95995 478 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 ALDH1A1P00352 501 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 SETSIPP0DME0 302 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 PNPLA4P41247 253 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 PSMC4P43686 418 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 PLTPP55058 493 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 JOSD2Q8TAC2 188 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 ART4Q93070 314 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 SPC25Q9HBM1 224 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 WHRNQ9P202 907 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 TJP2Q9UDY2 1190 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 TSPAN16Q9UKR8 245 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 NFS1Q9Y697 457 aa23.27■■□□□ 1.32
PNKP-220ENST00000627232 CASP8AP2Q9UKL3 1982 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 AKAP5P24588 427 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 MRPS6P82932 125 aaKnown RBP23.26■■□□□ 1.31
PNKP-220ENST00000627232 KRT17Q04695 432 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 SNX1Q13596 522 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 HADHQ16836 314 aaKnown RBP23.26■■□□□ 1.31
PNKP-220ENST00000627232 TTMPQ5BVD1 217 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 GNASQ5JWF2 1037 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 SPOCD1Q6ZMY3 1216 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 FBXO25Q8TCJ0 367 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 UBLCP1Q8WVY7 318 aaPredicted RBP23.26■■□□□ 1.31
PNKP-220ENST00000627232 TRIB2Q92519 343 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 RNF25Q96BH1 459 aaPredicted RBP23.26■■□□□ 1.31
PNKP-220ENST00000627232 APOL6Q9BWW8 343 aa23.26■■□□□ 1.31
PNKP-220ENST00000627232 HEMGNQ9BXL5 484 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms