RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 GZMAP12544 262 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 GJA5P36382 358 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 COILP38432 576 aaPredicted RBP15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 CELF3Q5SZQ8 465 aaKnown RBP15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 MROH7Q68CQ1 1323 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 C12orf29Q8N999 325 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 HSPH1Q92598 858 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 ST6GALNAC4Q9H4F1 302 aa15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 NKX1-2Q9UD57 310 aaPredicted RBP15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 MRPL42Q9Y6G3 142 aaKnown RBP15.25■□□□□ 0.03
SHROOM1-208ENST00000617339 NCANO14594 1321 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 GPR25O00155 361 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MAP3K13O43283 966 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SNX3O60493 162 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 TNNC2P02585 160 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 KRT1P04264 644 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 PEX5P50542 639 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 EIF3BP55884 814 aaKnown RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 DNAJC24Q6P3W2 148 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SLC30A9Q6PML9 568 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 CATSPER4Q7RTX7 472 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 NAF1Q96HR8 494 aaKnown RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 NENFQ9UMX5 172 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 BTNL10A8MVZ5 291 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SUN1O94901 812 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MMP13P45452 471 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 TUBP50607 506 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 RAD23BP54727 409 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 ANKS1BQ7Z6G8 1248 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 LONP2Q86WA8 852 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 FBXL18Q96ME1 805 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 CALN1Q9BXU9 219 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 CTNNAL1Q9UBT7 734 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MYH9P35579 1960 aaKnown RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 NFASCO94856 1347 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 TNS1Q9HBL0 1735 aaKnown RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 RASGRF2O14827 1237 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MSCO60682 206 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 PHF2O75151 1096 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MAFO75444 373 aaPredicted RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 C6orf222P0C671 652 aaPredicted RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 NEFHP12036 1026 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 RFX1P22670 979 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 IFRD2Q12894 506 aaPredicted RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 RIPK1Q13546 671 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 KIAA0319LQ8IZA0 1049 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 TMEM237Q96Q45 408 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SENP7Q9BQF6 1050 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 ADPGKQ9BRR6 497 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 PPP1R12CQ9BZL4 782 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SLITRK6Q9H5Y7 841 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SMYD3Q9H7B4 428 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 CORO1CQ9ULV4 474 aaPredicted RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 SSC5DA1L4H1 1573 aa15.24■□□□□ 0.03
SHROOM1-208ENST00000617339 MIF4GDA9UHW6 222 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 HCRTO43612 131 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 BLMHQ13867 455 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 OR6J1Q8NGC5 347 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 ACO2Q99798 780 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 WNT8AQ9H1J5 351 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 PABPC3Q9H361 631 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 GINM1Q9NU53 330 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 CACNG4Q9UBN1 327 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 LACTBL1A8MY62 500 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 KIAA0391O15091 583 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 PPFIA2O75334 1257 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 CNMDO75829 334 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 LDHAP00338 332 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 PDGFRBP09619 1106 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 CHKAP35790 457 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 YARSP54577 528 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 ABRAQ8N0Z2 381 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 RASGEF1CQ8N431 466 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 GLIS1Q8NBF1 620 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 RMDN2Q96LZ7 410 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 MIS12Q9H081 205 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 AP5M1Q9H0R1 490 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 MTRF1LQ9UGC7 380 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 COQ4Q9Y3A0 265 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 KIAA1217Q5T5P2 1943 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 H0YCG3 227 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 BANF1O75531 89 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 POLR2BP30876 1174 aaKnown RBP15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 POLE2P56282 527 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 GCNT1Q02742 428 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 MAMLD1Q13495 774 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 DENND1BQ6P3S1 775 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 FITM2Q8N6M3 262 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 ANKRD36BP1Q96IX9 119 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 CGRRF1Q99675 332 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 EPB41L4BQ9H329 900 aa15.23■□□□□ 0.03
SHROOM1-208ENST00000617339 KLHL33A6NCF5 533 aa15.22■□□□□ 0.03
SHROOM1-208ENST00000617339 OGTO15294 1046 aa15.22■□□□□ 0.03
SHROOM1-208ENST00000617339 GH1P01241 217 aa15.22■□□□□ 0.03
SHROOM1-208ENST00000617339 STAG3L1P0CL83 205 aa15.22■□□□□ 0.03
SHROOM1-208ENST00000617339 AKAP5P24588 427 aa15.22■□□□□ 0.03
SHROOM1-208ENST00000617339 ZNF667Q5HYK9 610 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms