RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 TREML2Q5T2D2 321 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 TDRD10Q5VZ19 366 aaKnown RBP13.78□□□□□ -0.2
TCF3-220ENST00000611869 ETNK1Q9HBU6 452 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 CPA4Q9UI42 421 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 CCDC78A2IDD5 438 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 PDHXO00330 501 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 EGFRP00533 1210 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 ADORA2AP29274 412 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 TNFSF9P41273 254 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 GTF2A2P52657 109 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 CAPSQ13938 189 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 FBXW10Q5XX13 1052 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 SPOCD1Q6ZMY3 1216 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 BSNDQ8WZ55 320 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 RAPGEF5Q92565 580 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 ALG3Q92685 438 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 PGBD4Q96DM1 585 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 TMEM176AQ96HP8 235 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 CLMNQ96JQ2 1002 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 SENP1Q9P0U3 644 aa13.78□□□□□ -0.2
TCF3-220ENST00000611869 GPC4O75487 556 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 NCF2P19878 526 aaPredicted RBP13.77□□□□□ -0.2
TCF3-220ENST00000611869 ZNF844Q08AG5 666 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 MFSD7Q6UXD7 560 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 PLEKHH3Q7Z736 793 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 KREMEN1Q96MU8 473 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 FOXP3Q9BZS1 431 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 ZNF518BQ9C0D4 1074 aa13.77□□□□□ -0.2
TCF3-220ENST00000611869 PSMC3IPQ9P2W1 217 aaPredicted RBP13.77□□□□□ -0.2
TCF3-220ENST00000611869 FRMD3A2A2Y4 597 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 RBAK-RBAKDNI3L0D1 243 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 SYF2O95926 243 aaKnown RBP13.77□□□□□ -0.21
TCF3-220ENST00000611869 CALRP27797 417 aaKnown RBP13.77□□□□□ -0.21
TCF3-220ENST00000611869 ADCYAP1R1P41586 468 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 AARSP49588 968 aaKnown RBP eCLIP13.77□□□□□ -0.214e-6■■■■□ 21.5
TCF3-220ENST00000611869 TPI1P60174 286 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 CCNG2Q16589 344 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 WHRNQ9P202 907 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 IPO11Q9UI26 975 aaKnown RBP13.77□□□□□ -0.21
TCF3-220ENST00000611869 UBQLN1Q9UMX0 589 aaKnown RBP13.77□□□□□ -0.21
TCF3-220ENST00000611869 H0Y3Z8 333 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 FECHP22830 423 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 BBS5Q8N3I7 341 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 ZFP69BQ9UJL9 534 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 ATRNL1Q5VV63 1379 aa13.77□□□□□ -0.21
TCF3-220ENST00000611869 LSM8O95777 96 aaKnown RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 TAF6P49848 677 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 ACTN3Q08043 901 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 PLCB4Q15147 1175 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 ZACNQ401N2 412 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 BOLA3Q53S33 107 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 NUDCD3Q8IVD9 361 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 ZSWIM2Q8NEG5 633 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 RXFP2Q8WXD0 754 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 AFG3L2Q9Y4W6 797 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 LACTBL1A8MY62 500 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 F8VP50 259 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 ZNF862O60290 1169 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 DEUP1Q05D60 604 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 LLGL2Q6P1M3 1020 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 KDELC2Q7Z4H8 507 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 WDR75Q8IWA0 830 aaKnown RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 PPIL6Q8IXY8 311 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 LRRC34Q8IZ02 419 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 FSD1LQ9BXM9 530 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 DCLK3Q9C098 648 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 SNTG2Q9NY99 539 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 TYK2P29597 1187 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 C4orf50Q6ZRC1 276 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 RYBPQ8N488 228 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 CEP120Q8N960 986 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 HES6Q96HZ4 224 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 DDX23Q9BUQ8 820 aaKnown RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 KATNAL1Q9BW62 490 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 AVENQ9NQS1 362 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 ZFATQ9P243 1243 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 PAK5Q9P286 719 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 USP18Q9UMW8 372 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 GCLCP48506 637 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 NDST1P52848 882 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 ARFIP2P53365 341 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 BTBD8Q5XKL5 378 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 FOXR1Q6PIV2 292 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 SLC7A14Q8TBB6 771 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 SERPINB12Q96P63 405 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 PCDHB18PQ96TA0 734 aa13.76□□□□□ -0.21
TCF3-220ENST00000611869 SMG5Q9UPR3 1016 aaKnown RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 USP15Q9Y4E8 981 aaPredicted RBP13.76□□□□□ -0.21
TCF3-220ENST00000611869 BTNL10A8MVZ5 291 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 ZNF200P98182 395 aaPredicted RBP13.75□□□□□ -0.21
TCF3-220ENST00000611869 GRIK4Q16099 956 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 DCAF4L1Q3SXM0 396 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 SV2CQ496J9 727 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 ATP13A4Q4VNC1 1196 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 FAM172AQ8WUF8 416 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 SGSM3Q96HU1 749 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 NUDCD1Q96RS6 583 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 ECT2Q9H8V3 914 aa13.75□□□□□ -0.21
TCF3-220ENST00000611869 GBA2Q9HCG7 927 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms