RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 KCNMA1Q12791 1236 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 MAPRE1Q15691 268 aaKnown RBP20.63■□□□□ 0.89
UPF1-209ENST00000600310 PHLDB3Q6NSJ2 640 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 ARHGEF19Q8IW93 802 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 CRYBG2Q8N1P7 616 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 PPM1KQ8N3J5 372 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 B3GALNT2Q8NCR0 500 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 CMASQ8NFW8 434 aaPredicted RBP20.63■□□□□ 0.89
UPF1-209ENST00000600310 SLC7A14Q8TBB6 771 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 WHAMMQ8TF30 809 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 TNIP3Q96KP6 325 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 S1PR5Q9H228 398 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 DPEP3Q9H4B8 488 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 CISHQ9NSE2 258 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 CD207Q9UJ71 328 aa20.63■□□□□ 0.89
UPF1-209ENST00000600310 SPDYE4A6NLX3 237 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 H3BQ06 376 aaPredicted RBP20.62■□□□□ 0.89
UPF1-209ENST00000600310 PRRG1O14668 218 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 CD58P19256 250 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 YWHAEP62258 255 aaKnown RBP20.62■□□□□ 0.89
UPF1-209ENST00000600310 DUSP4Q13115 394 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 CCDC142Q17RM4 750 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 LEXMQ3ZCV2 418 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 PPM1LQ5SGD2 360 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 FKBP15Q5T1M5 1219 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 RRAGAQ7L523 313 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 UBR7Q8N806 425 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 C12orf76Q8N812 135 aaPredicted RBP20.62■□□□□ 0.89
UPF1-209ENST00000600310 MYCBPAPQ8TBZ2 947 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 SPPL2BQ8TCT7 592 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 TWNKQ96RR1 684 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 NT5C1AQ9BXI3 368 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 CRISPLD1Q9H336 500 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 ABCB6Q9NP58 842 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 THEGQ9P2T0 379 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 HMGXB4Q9UGU5 601 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 PCDHB5Q9Y5E4 795 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 PLXNA3P51805 1871 aa20.62■□□□□ 0.89
UPF1-209ENST00000600310 RFPL2O75678 378 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 HNRNPA1P09651 372 aaKnown RBP eCLIP20.61■□□□□ 0.89
UPF1-209ENST00000600310 RARS2Q5T160 578 aaKnown RBP20.61■□□□□ 0.89
UPF1-209ENST00000600310 C4orf50Q6ZRC1 276 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 ENOSF1Q7L5Y1 443 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 ACOT1Q86TX2 421 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 SMRP1Q8NCR6 262 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 KAT5Q92993 513 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 JAKMIP2Q96AA8 810 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 PCED1BQ96HM7 432 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 FUBP3Q96I24 572 aaKnown RBP eCLIP20.61■□□□□ 0.89
UPF1-209ENST00000600310 FAM81BQ96LP2 452 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 KREMEN1Q96MU8 473 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 RHOBTB2Q9BYZ6 727 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 ELOVL4Q9GZR5 314 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 ADAM7Q9H2U9 754 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 SIX2Q9NPC8 291 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 UBE2TQ9NPD8 197 aaPredicted RBP20.61■□□□□ 0.89
UPF1-209ENST00000600310 ABI2Q9NYB9 513 aaPredicted RBP20.61■□□□□ 0.89
UPF1-209ENST00000600310 APEX2Q9UBZ4 518 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 INSL5Q9Y5Q6 135 aa20.61■□□□□ 0.89
UPF1-209ENST00000600310 CCDC195A0A1B0GUA6 201 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 POU2F2P09086 479 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 TUFMP49411 452 aaKnown RBP20.6■□□□□ 0.89
UPF1-209ENST00000600310 ITIH3Q06033 890 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 CFAP221Q4G0U5 840 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 MDH1BQ5I0G3 518 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 DPY19L2P1Q6NXN4 242 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 TMC5Q6UXY8 1006 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 CYP26C1Q6V0L0 522 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 GPR149Q86SP6 731 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 SPATA2LQ8IUW3 424 aaPredicted RBP20.6■□□□□ 0.89
UPF1-209ENST00000600310 TTC9BQ8N6N2 239 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 MYLPFQ96A32 169 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 PRKD2Q9BZL6 878 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 DNAI2Q9GZS0 605 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 SLC27A5Q9Y2P5 690 aa20.6■□□□□ 0.89
UPF1-209ENST00000600310 HAPLN1P10915 354 aaPredicted RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 TRIM21P19474 475 aaKnown RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 ACO1P21399 889 aaKnown RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 CDR1P51861 262 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 RAD23BP54727 409 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 APBA1Q02410 837 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 TFF2Q03403 129 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 UBXN1Q04323 297 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 ORC1Q13415 861 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 SMAD4Q13485 552 aaKnown RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 CLUL1Q15846 466 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 MGAT5BQ3V5L5 792 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 CES5AQ6NT32 575 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 GJB7Q6PEY0 223 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 ZNF707Q96C28 371 aaPredicted RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 TMEM176AQ96HP8 235 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 LPIN3Q9BQK8 851 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 APOL5Q9BWW9 433 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 RTN4Q9NQC3 1192 aaKnown RBP20.59■□□□□ 0.89
UPF1-209ENST00000600310 YIPF1Q9Y548 306 aa20.59■□□□□ 0.89
UPF1-209ENST00000600310 LRG1P02750 347 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 MFAP3P55082 362 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 CYP27A1Q02318 531 aa20.58■□□□□ 0.89
UPF1-209ENST00000600310 AAK1Q2M2I8 961 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms