RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NFX1Q12986 1120 aaKnown RBP15.29■□□□□ 0.04
VRK3-217ENST00000599538 ZBTB6Q15916 424 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 DCAF4L1Q3SXM0 396 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 ZFYVE27Q5T4F4 411 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 SLITRK1Q96PX8 696 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 LPIN3Q9BQK8 851 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 MRPL45Q9BRJ2 306 aaKnown RBP15.29■□□□□ 0.04
VRK3-217ENST00000599538 RNF39Q9H2S5 420 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 CENPHQ9H3R5 247 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 TMBIM4Q9HC24 238 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 METTL5Q9NRN9 209 aaKnown RBP15.29■□□□□ 0.04
VRK3-217ENST00000599538 KLK14Q9P0G3 267 aa15.29■□□□□ 0.04
VRK3-217ENST00000599538 BARX2Q9UMQ3 279 aaPredicted RBP15.29■□□□□ 0.04
VRK3-217ENST00000599538 PASKQ96RG2 1323 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 HCRTO43612 131 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 RECQL4O94761 1208 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 IGHA2P01877 340 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 KRT1P04264 644 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 IVDP26440 423 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 IL1R2P27930 398 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 VPS41P49754 854 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 ATP1A2P50993 1020 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 SNX17Q15036 470 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 RGMBQ6NW40 437 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 LRIG3Q6UXM1 1119 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 SLCO2A1Q92959 643 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 ART4Q93070 314 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 FAXDC2Q96IV6 333 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 PIWIL1Q96J94 861 aaKnown RBP15.28■□□□□ 0.04
VRK3-217ENST00000599538 SEMA4AQ9H3S1 761 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 SNX9Q9Y5X1 595 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 SIGLEC16A6NMB1 481 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 TULP2O00295 520 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 PFKMP08237 780 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 ATF7P17544 494 aaPredicted RBP15.28■□□□□ 0.04
VRK3-217ENST00000599538 CRHR2Q13324 411 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 PDCLQ13371 301 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 CNGA2Q16280 664 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 SMTNL2Q2TAL5 461 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 CHADLQ6NUI6 762 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 NOTUMQ6P988 496 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 TRPV1Q8NER1 839 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 ATP6V1G3Q96LB4 118 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 CCDC114Q96M63 670 aa15.28■□□□□ 0.04
VRK3-217ENST00000599538 PIN4Q9Y237 131 aaKnown RBP15.28■□□□□ 0.04
VRK3-217ENST00000599538 HTTP42858 3142 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 LRCH4O75427 683 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 VDRP11473 427 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 P4HA1P13674 534 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 PSMA2P25787 234 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 PMS2P54278 862 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 MTMR3Q13615 1198 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 PIGHQ14442 188 aaPredicted RBP15.27■□□□□ 0.04
VRK3-217ENST00000599538 SKIDA1Q1XH10 827 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 RAB6CQ53S08 254 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 KCNT1Q5JUK3 1230 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 ALKAL1Q6UXT8 129 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 UHMK1Q8TAS1 419 aaKnown RBP15.27■□□□□ 0.04
VRK3-217ENST00000599538 RAB6CQ9H0N0 254 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 SYNCQ9H7C4 482 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 ASIC3Q9UHC3 531 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 TSPAN16Q9UKR8 245 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 STRIP2Q9ULQ0 834 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 NEU2Q9Y3R4 380 aa15.27■□□□□ 0.04
VRK3-217ENST00000599538 DCDC2CA8MYV0 355 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 TNPO2O14787 897 aaKnown RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 STAU1O95793 577 aaKnown RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 RGS2P41220 211 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 CPT1AP50416 773 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 PPP1R26Q5T8A7 1209 aaPredicted RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 TRNP1Q6NT89 227 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 NT5DC4Q86YG4 428 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 NIPA2Q8N8Q9 360 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 GLIS1Q8NBF1 620 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 MAIP1Q8WWC4 291 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 HAUS1Q96CS2 278 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 PWWP2AQ96N64 755 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 RUNDC3BQ96NL0 473 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 ARHGAP39Q9C0H5 1083 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 ZWILCHQ9H900 591 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 PLEKHA5Q9HAU0 1116 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 GOLGA2P5Q9HBQ8 144 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 AAASQ9NRG9 546 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 RALGAPA2Q2PPJ7 1873 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 LRRD1A4D1F6 860 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 HMGCRP04035 888 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 ACTN2P35609 894 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 CHKAP35790 457 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 PURAQ00577 322 aaKnown RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 SLC25A11Q02978 314 aaKnown RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 TAP1Q03518 808 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 TAF5Q15542 800 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 CCNG2Q16589 344 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 FSCN1Q16658 493 aaKnown RBP15.26■□□□□ 0.03
VRK3-217ENST00000599538 UBXN11Q5T124 520 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 SH3PXD2AQ5TCZ1 1133 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 FOXR1Q6PIV2 292 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 LRRC31Q6UY01 552 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 SPOCD1Q6ZMY3 1216 aa15.26■□□□□ 0.03
VRK3-217ENST00000599538 ACOT1Q86TX2 421 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms