RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMEM30AQ9NV96 361 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 ABI2Q9NYB9 513 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 MAFFQ9ULX9 164 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 NFE2L3Q9Y4A8 694 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 SYCE3A1L190 88 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 LOC730098B7Z3J9 87 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 CLDN5O00501 218 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 AFPP02771 609 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 POU2F2P09086 479 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ATF6P18850 670 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 CCR2P41597 374 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 CACNA2D1P54289 1103 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 TSPY1Q01534 308 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 APBA1Q02410 837 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 NFKBIBQ15653 356 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 TPD52L1Q16890 204 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ANO6Q4KMQ2 910 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 MDH1BQ5I0G3 518 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 MIIPQ5JXC2 388 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 CDKAL1Q5VV42 579 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 CYP26C1Q6V0L0 522 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 PAQR9Q6ZVX9 377 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 RTL10Q7L3V2 364 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ACOT1Q86TX2 421 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ARHGEF19Q8IW93 802 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ADHFE1Q8IWW8 467 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 EHBP1Q8NDI1 1231 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 MYCBPAPQ8TBZ2 947 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 GPR152Q8TDT2 470 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 KHSRPQ92945 711 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 MYLPFQ96A32 169 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 TCEAL4Q96EI5 215 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 PCED1BQ96HM7 432 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 RPGRIP1Q96KN7 1286 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 MYADMQ96S97 322 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 B3GNT5Q9BYG0 378 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 ELOVL4Q9GZR5 314 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 PIDD1Q9HB75 910 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 FANCLQ9NW38 375 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 PCDHB5Q9Y5E4 795 aa15.17■□□□□ 0.02
SHKBP1-217ENST00000598558 C2CD4DB7Z1M9 353 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 MOSPD3O75425 235 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CLSTN1O94985 981 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 LRG1P02750 347 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CD58P19256 250 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 INCA1Q0VD86 236 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 DDR2Q16832 855 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 SLC5A9Q2M3M2 681 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 MGAT5BQ3V5L5 792 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 DPY19L2P1Q6NXN4 242 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 ELMSAN1Q6PJG2 1045 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CRYBG2Q8N1P7 616 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 UBR7Q8N806 425 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 C12orf29Q8N999 325 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 SPPL2BQ8TCT7 592 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 GIPC2Q8TF65 315 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 NECTIN4Q96NY8 510 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 UHRF1Q96T88 793 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 SEPT5Q99719 369 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CORO1BQ9BR76 489 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CRACR2AQ9BSW2 395 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CYP3A43Q9HB55 503 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 ZNF334Q9HCZ1 680 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 CLUHO75153 1309 aa15.16■□□□□ 0.02
SHKBP1-217ENST00000598558 KCNJ18B7U540 433 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 P4HA2O15460 535 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 XYLBO75191 536 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 CILPO75339 1184 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 RHOP08100 348 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 P4HA1P13674 534 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 SLC9A1P19634 815 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 BDNFP23560 247 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 MTIF2P46199 727 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 SMARCB1Q12824 385 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 MTMR3Q13615 1198 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 KCNJ12Q14500 433 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 NFE2Q16621 373 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 TCP11X2Q5H9J9 407 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 WDR44Q5JSH3 913 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 PHLDB3Q6NSJ2 640 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 DNAJB7Q7Z6W7 309 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 TMC8Q8IU68 726 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 B3GALNT2Q8NCR0 500 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 ST13P5Q8NFI4 369 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 C2orf15Q8WU43 125 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 TUBGCP2Q9BSJ2 902 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 IMPG2Q9BZV3 1241 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 ZNF518BQ9C0D4 1074 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 INTS2Q9H0H0 1204 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 CISHQ9NSE2 258 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 HSFX1Q9UBD0 423 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 PRKAG3Q9UGI9 489 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 FAM50BQ9Y247 325 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 VCANP13611 3396 aa15.15■□□□□ 0.02
SHKBP1-217ENST00000598558 HMGA1P17096 107 aaKnown RBP15.14■□□□□ 0.01
SHKBP1-217ENST00000598558 GJA1P17302 382 aa15.14■□□□□ 0.01
SHKBP1-217ENST00000598558 PTPN2P17706 415 aa15.14■□□□□ 0.01
SHKBP1-217ENST00000598558 ACO1P21399 889 aaKnown RBP15.14■□□□□ 0.01
SHKBP1-217ENST00000598558 ALDH1A3P47895 512 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms