RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 FUBP3Q96I24 572 aaKnown RBP eCLIP21.69■■□□□ 1.06
PNKP-211ENST00000598020 TNIP3Q96KP6 325 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 PGLYRP2Q96PD5 576 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 INTS2Q9H0H0 1204 aaKnown RBP21.69■■□□□ 1.06
PNKP-211ENST00000598020 CRISPLD1Q9H336 500 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 GTF3C4Q9UKN8 822 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 PCDHB5Q9Y5E4 795 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 INSL5Q9Y5Q6 135 aa21.69■■□□□ 1.06
PNKP-211ENST00000598020 SPTBN5Q9NRC6 3674 aaKnown RBP21.68■■□□□ 1.06
PNKP-211ENST00000598020 SPDYE4A6NLX3 237 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 ATP2C2O75185 946 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 CILPO75339 1184 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 PTPN1P18031 435 aaKnown RBP21.68■■□□□ 1.06
PNKP-211ENST00000598020 TUFMP49411 452 aaKnown RBP21.68■■□□□ 1.06
PNKP-211ENST00000598020 NDST1P52848 882 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 GCNT1Q02742 428 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 DUSP4Q13115 394 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 CLUL1Q15846 466 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 EXOC3L4Q17RC7 722 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 CFAP221Q4G0U5 840 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 SMYD5Q6GMV2 418 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 PTCRAQ6ISU1 281 aaPredicted RBP21.68■■□□□ 1.06
PNKP-211ENST00000598020 TMC5Q6UXY8 1006 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 B3GALNT2Q8NCR0 500 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 ANKRD20A12PQ8NF67 263 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 ASB2Q96Q27 587 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 GCNT4Q9P109 453 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 FAM50BQ9Y247 325 aa21.68■■□□□ 1.06
PNKP-211ENST00000598020 USP15Q9Y4E8 981 aaPredicted RBP21.68■■□□□ 1.06
PNKP-211ENST00000598020 MTHFRP42898 656 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 PSMC1P62191 440 aaKnown RBP21.67■■□□□ 1.06
PNKP-211ENST00000598020 YWHAEP62258 255 aaKnown RBP21.67■■□□□ 1.06
PNKP-211ENST00000598020 SMAD2Q15796 467 aaKnown RBP21.67■■□□□ 1.06
PNKP-211ENST00000598020 ATAT1Q5SQI0 421 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 TRIM65Q6PJ69 517 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 C4orf50Q6ZRC1 276 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.67■■□□□ 1.06
PNKP-211ENST00000598020 UBR7Q8N806 425 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 WHAMMQ8TF30 809 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 RIPOR3Q96MK2 946 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 NECTIN4Q96NY8 510 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 ARID3AQ99856 593 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 DPEP3Q9H4B8 488 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 CBX8Q9HC52 389 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 CISHQ9NSE2 258 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 TAB2Q9NYJ8 693 aa21.67■■□□□ 1.06
PNKP-211ENST00000598020 BECN2A8MW95 431 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 XYLBO75191 536 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 TPM2P07951 284 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 HAPLN1P10915 354 aaPredicted RBP21.66■■□□□ 1.06
PNKP-211ENST00000598020 CDK11BP21127 795 aaKnown RBP21.66■■□□□ 1.06
PNKP-211ENST00000598020 PON1P27169 355 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 MAGEA11P43364 429 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 LRMPQ12912 555 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 PLD1Q13393 1074 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 LRSAM1Q6UWE0 723 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 APTXQ7Z2E3 356 aaKnown RBP21.66■■□□□ 1.06
PNKP-211ENST00000598020 SMG7Q92540 1137 aaKnown RBP21.66■■□□□ 1.06
PNKP-211ENST00000598020 JAKMIP2Q96AA8 810 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 PCED1BQ96HM7 432 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 FAM81BQ96LP2 452 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 CRACR2AQ9BSW2 395 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 APOL5Q9BWW9 433 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 NT5C1AQ9BXI3 368 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 DNAI2Q9GZS0 605 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 ABI2Q9NYB9 513 aaPredicted RBP21.66■■□□□ 1.06
PNKP-211ENST00000598020 HMGXB4Q9UGU5 601 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 SLC27A5Q9Y2P5 690 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 YIPF1Q9Y548 306 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 C2orf16Q68DN1 1984 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 PTPRDP23468 1912 aa21.66■■□□□ 1.06
PNKP-211ENST00000598020 LRG1P02750 347 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 BMP1P13497 986 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 CD58P19256 250 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 SLC9A1P19634 815 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 KCNQ1P51787 676 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 COPB1P53618 953 aaKnown RBP21.65■■□□□ 1.06
PNKP-211ENST00000598020 CBX2Q14781 532 aaPredicted RBP21.65■■□□□ 1.06
PNKP-211ENST00000598020 CCDC142Q17RM4 750 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 MDH1BQ5I0G3 518 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 PHLDB3Q6NSJ2 640 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 SPATA2LQ8IUW3 424 aaPredicted RBP21.65■■□□□ 1.06
PNKP-211ENST00000598020 PPM1KQ8N3J5 372 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 FAM200AQ8TCP9 573 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 MYLPFQ96A32 169 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 TWNKQ96RR1 684 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 VPS16Q9H269 839 aa21.65■■□□□ 1.06
PNKP-211ENST00000598020 DOCK6Q96HP0 2047 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 ATP1A3P13637 1013 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 TRIM21P19474 475 aaKnown RBP21.64■■□□□ 1.05
PNKP-211ENST00000598020 ALDH1A3P47895 512 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 TWF1Q12792 350 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 DPY19L2P1Q6NXN4 242 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 VSTM1Q6UX27 236 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 ENOSF1Q7L5Y1 443 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 ACOT1Q86TX2 421 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 ARHGEF19Q8IW93 802 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 TTC9BQ8N6N2 239 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 FEZF2Q8TBJ5 459 aa21.64■■□□□ 1.05
PNKP-211ENST00000598020 ELOVL4Q9GZR5 314 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms