RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KLRC4O43908 158 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 STAMBPO95630 424 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 F9P00740 461 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 GYPCP04921 128 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 NFICP08651 508 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 USP41Q3LFD5 358 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 ITPRIPL1Q6GPH6 555 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 GDAP1Q8TB36 358 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 IGFLR1Q9H665 355 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 GTF3C4Q9UKN8 822 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 SGPL1O95470 568 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 C22orf31O95567 290 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 TMEM253P0C7T8 217 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PSRC1Q6PGN9 363 aaPredicted RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 MAMDC4Q6UXC1 1216 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 CAPN12Q6ZSI9 719 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 CCDC149Q6ZUS6 474 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 ANKS3Q6ZW76 656 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 MIB1Q86YT6 1006 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 FEZF2Q8TBJ5 459 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 IFT43Q96FT9 208 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PGLYRP2Q96PD5 576 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 NXF3Q9H4D5 531 aaKnown RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 DMAP1Q9NPF5 467 aaPredicted RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 SPG21Q9NZD8 308 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PLAGL2Q9UPG8 496 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PPP1R12AO14974 1030 aaPredicted RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 LSM8O95777 96 aaKnown RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 PNMA6AP0CW24 399 aaPredicted RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 MX2P20592 715 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 TNS4Q8IZW8 715 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 GLIS3Q8NEA6 775 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 SMARCD1Q96GM5 515 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 UBE2OQ9C0C9 1292 aaKnown RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 METTL5Q9NRN9 209 aaKnown RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 APOL1O14791 398 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PPARGP37231 505 aaPredicted RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 THOC5Q13769 683 aaKnown RBP10.33□□□□□ -0.76
LIG3-216ENST00000593099 BMT2Q1RMZ1 405 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 PPFIBP2Q8ND30 876 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 SLC35G2Q8TBE7 412 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 RABGGTAQ92696 567 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 CFAP57Q96MR6 1250 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 SATB2Q9UPW6 733 aa10.33□□□□□ -0.76
LIG3-216ENST00000593099 ZNF500O60304 480 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 CAND2O75155 1236 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 ADH1AP07327 375 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CYP2C18P33260 490 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 GARSP41250 739 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 NOVP48745 357 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 PURAQ00577 322 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 MDM2Q00987 491 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 SP2Q02086 613 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 KRT71Q3SY84 523 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CES5AQ6NT32 575 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 UNC93AQ86WB7 457 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 PDIK1LQ8N165 341 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 LENG9Q96B70 501 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 FSD1LQ9BXM9 530 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 AP1M1Q9BXS5 423 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CATSPERBQ9H7T0 1116 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 ARHGAP28Q9P2N2 729 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 UXTQ9UBK9 157 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 A0A0B4J269 797 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 M0QYT0 321 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 DFFAO00273 331 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 PAEPP09466 180 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 TKTL1P51854 596 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CDH8P55286 799 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 C1QTNF8P60827 252 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 FPGSQ05932 587 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CFAP157Q5JU67 520 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 WSCD1Q658N2 575 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 DDX53Q86TM3 631 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 SKA2Q8WVK7 121 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 CDK5RAP1Q96SZ6 601 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 TLR8Q9NR97 1041 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 MRFAP1Q9Y605 127 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 EEF2KO00418 725 aaKnown RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 DNM1LO00429 736 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 RTN3O95197 1032 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 F2P00734 622 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 ADRB2P07550 413 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 RFC1P35251 1148 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 ZNF211Q13398 564 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 TRIP13Q15645 432 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 ELF2Q15723 593 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 SLC39A12Q504Y0 691 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CCDC92Q53HC0 331 aaPredicted RBP10.32□□□□□ -0.76
LIG3-216ENST00000593099 BOLA3Q53S33 107 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 SDE2Q6IQ49 451 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 RCOR2Q8IZ40 523 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 CEP120Q8N960 986 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 FAF2Q96CS3 445 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 TRIM7Q9C029 511 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 TSPAN16Q9UKR8 245 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 DERAQ9Y315 318 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 ASTN1O14525 1302 aa10.32□□□□□ -0.76
LIG3-216ENST00000593099 RASSF10A6NK89 507 aa10.31□□□□□ -0.76
LIG3-216ENST00000593099 F8VZ95 297 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms