RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 COA7Q96BR5 231 aa4.58□□□□□ -1.68
SMCHD1-206ENST00000581631 MACROD1Q9BQ69 325 aa4.58□□□□□ -1.68
SMCHD1-206ENST00000581631 BRD9Q9H8M2 597 aa4.58□□□□□ -1.68
SMCHD1-206ENST00000581631 DUSP22Q9NRW4 184 aa4.58□□□□□ -1.68
SMCHD1-206ENST00000581631 AFG3L2Q9Y4W6 797 aa4.58□□□□□ -1.68
SMCHD1-206ENST00000581631 CNTNAP2Q9UHC6 1331 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA12O60330 932 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 CPEP16870 476 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 ITGALP20701 1170 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 CNGA1P29973 690 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 ARHGAP25P42331 645 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 SLC16A1P53985 500 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 POLGP54098 1239 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 EEFSECP57772 596 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 RABEP1Q15276 862 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 Q4G0T1 1027 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 FAM90A1Q86YD7 464 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 RITA1Q96K30 269 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 C5orf34Q96MH7 638 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 VRK1Q99986 396 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 FSD1LQ9BXM9 530 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 CFAP97Q9P2B7 532 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 SERPINB13Q9UIV8 391 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 SH2B3Q9UQQ2 575 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA9Q9Y5G4 932 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA8Q9Y5G5 932 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA7Q9Y5G6 932 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA6Q9Y5G7 932 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 PCDHGA3Q9Y5H0 932 aa4.57□□□□□ -1.68
SMCHD1-206ENST00000581631 H3BNC9 293 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 FZD9O00144 591 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 KIF20AO95235 890 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 IL6RP08887 468 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 TKTP29401 623 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 IARSP41252 1262 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 GCLCP48506 637 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 KIF22Q14807 665 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 TRIP6Q15654 476 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 KHDC1Q4VXA5 237 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 EGFLAMQ63HQ2 1017 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 PPP4R3AQ6IN85 833 aa4.56□□□□□ -1.68
SMCHD1-206ENST00000581631 TTC3P53804 2025 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 SLC16A3O15427 465 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 RARBP10826 455 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 PRDX5P30044 214 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 CCKARP32238 428 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 CYP2C18P33260 490 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 ALDH9A1P49189 494 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 CLCN2P51788 898 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 SP2Q02086 613 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 PIGOQ8TEQ8 1089 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 COQ8BQ96D53 544 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 ASB2Q96Q27 587 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 C1orf43Q9BWL3 253 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 EBF3Q9H4W6 596 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 RAD54BQ9Y620 910 aa4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 CFAP20Q9Y6A4 193 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-206ENST00000581631 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 H7C1Q1 480 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 VPS4BO75351 444 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 TJP3O95049 919 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 SNHG28P0DPA3 235 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 HTRA4P83105 476 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 HOXA4Q00056 320 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 CLUL1Q15846 466 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 PCID2Q5JVF3 399 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 PXDC1Q5TGL8 231 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 IRF2BP2Q7Z5L9 587 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 CNTD1Q8N815 330 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 NRACQ8N912 160 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 PNLDC1Q8NA58 520 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 CYP2W1Q8TAV3 490 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 VCPIP1Q96JH7 1222 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 NELL2Q99435 816 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 THAP7Q9BT49 309 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 SSX2IPQ9Y2D8 614 aa4.54□□□□□ -1.68
SMCHD1-206ENST00000581631 WDR17Q8IZU2 1322 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 CCDC187A0A096LP49 1063 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 PRR23D1E9PI22 279 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 QSOX1O00391 747 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 SOCS2O14508 198 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 TLR5O60602 858 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 GNAI3P08754 354 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 PRR23D2P0DMB1 279 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 ENGP17813 658 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 PIK3CGP48736 1102 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 GNAI1P63096 354 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 MIDNQ504T8 468 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 TREML2Q5T2D2 321 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 NAPRTQ6XQN6 538 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 TRIM72Q6ZMU5 477 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 TTC7BQ86TV6 843 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 MAN1C1Q9NR34 630 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 ADAMTS5Q9UNA0 930 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 PRKAB1Q9Y478 270 aa4.53□□□□□ -1.68
SMCHD1-206ENST00000581631 LY6G6EA0A0G2JKS1 128 aa4.52□□□□□ -1.69
SMCHD1-206ENST00000581631 LRRC14BA6NHZ5 514 aa4.52□□□□□ -1.69
SMCHD1-206ENST00000581631 DCLK1O15075 740 aa4.52□□□□□ -1.69
SMCHD1-206ENST00000581631 FTH1P19P0C7X4 201 aa4.52□□□□□ -1.69
SMCHD1-206ENST00000581631 ATP5F1P24539 256 aaPredicted RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms