RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-209	ENST00000578329	CNNM4	Q6P4Q7	775 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ELMSAN1	Q6PJG2	1045 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DSTYK	Q6XUX3	929 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ERMP1	Q7Z2K6	904 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CD302	Q8IX05	232 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GRAMD1C	Q8IYS0	662 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CMTM8	Q8IZV2	173 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PHTF2	Q8N3S3	785 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SPEM1	Q8N4L4	309 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DEPDC1B	Q8WUY9	529 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	LEO1	Q8WVC0	666 aa	Predicted RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SCFD1	Q8WVM8	642 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	IRF7	Q92985	503 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	FAM212A	Q96EL1	285 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SHD	Q96IW2	340 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZFR	Q96KR1	1074 aa	Known RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MYRFL	Q96LU7	910 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZNF512	Q96ME7	567 aa	Predicted RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TSPAN18	Q96SJ8	248 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	NELL2	Q99435	816 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MRPL45	Q9BRJ2	306 aa	Known RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	FAM213A	Q9BRX8	229 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PI4K2A	Q9BTU6	479 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	BACH2	Q9BYV9	841 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TRIM9	Q9C026	710 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MTMR12	Q9C0I1	747 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	RNF38	Q9H0F5	515 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SDCBP2	Q9H190	292 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DPEP3	Q9H4B8	488 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	EBF3	Q9H4W6	596 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PCIF1	Q9H4Z3	704 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CD248	Q9HCU0	757 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GKN1	Q9NS71	199 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	FOXD4L1	Q9NU39	408 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	INTS13	Q9NVM9	706 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	OBP2A	Q9NY56	170 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TFIP11	Q9UBB9	837 aa	Known RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	STK17A	Q9UEE5	414 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DAXX	Q9UER7	740 aa	Predicted RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GTF3C4	Q9UKN8	822 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	AGAP1	Q9UPQ3	857 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	WASF3	Q9UPY6	502 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TNRC6B	Q9UPQ9	1833 aa	Known RBP	4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CACNA1E	Q15878	2313 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SPEG	Q15772	3267 aa		4.8	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GON4L	Q3T8J9	2241 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DCDC2B	A2VCK2	349 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	VPS37C	A5D8V6	355 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329		H3BQV1	296 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TRDMT1	O14717	391 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SCAMP3	O14828	347 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZNF263	O14978	683 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	DCLK1	O15075	740 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	KIN	O60870	393 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	KRT37	O76014	449 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	VNN1	O95497	513 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ODC1	P11926	461 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GART	P22102	1010 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GJA4	P35212	333 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	RAP1GAP	P47736	663 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CASP4	P49662	377 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TAF6	P49848	677 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	GALK1	P51570	392 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	EPHB3	P54753	998 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PSMC1	P62191	440 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TFAM	Q00059	246 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SPEM2	Q0P670	501 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CCDC6	Q16204	474 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	EML3	Q32P44	896 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MGAT5B	Q3V5L5	792 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	INTS6L	Q5JSJ4	861 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PLA2G2C	Q5R387	149 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	KBTBD6	Q86V97	674 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MON1A	Q86VX9	555 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	C12orf40	Q86WS4	652 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	RALGPS2	Q86X27	583 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	FAM160A2	Q8N612	972 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	PDILT	Q8N807	584 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	FRMD1	Q8N878	549 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	MAB21L3	Q8N8X9	362 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	LEMD2	Q8NC56	503 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	KIAA0895	Q8NCT3	520 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZMIZ2	Q8NF64	920 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZNF507	Q8TCN5	953 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	BPIFB1	Q8TDL5	484 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	POMGNT1	Q8WZA1	660 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	HVCN1	Q96D96	273 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	BICD1	Q96G01	975 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CALML4	Q96GE6	196 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TRMT2B	Q96GJ1	504 aa	Known RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CNTNAP3B	Q96NU0	1288 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SEPT5	Q99719	369 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ACBD6	Q9BR61	282 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	TTLL2	Q9BWV7	592 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	CNTNAP3	Q9BZ76	1288 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ATXN3L	Q9H3M9	355 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	SMOC1	Q9H4F8	434 aa		4.79	□□□□□ -1.64
PPP4R1-209	ENST00000578329	ZHX3	Q9H4I2	956 aa		4.79	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms