RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 ABI2Q9NYB9 513 aaPredicted RBP16.91■□□□□ 0.3
CHD3-215ENST00000572750 PRKAG3Q9UGI9 489 aa16.91■□□□□ 0.3
CHD3-215ENST00000572750 YIPF1Q9Y548 306 aa16.91■□□□□ 0.3
CHD3-215ENST00000572750 ATP2C2O75185 946 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 TACC1O75410 805 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 SOAT2O75908 522 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 HNRNPA1P09651 372 aaKnown RBP eCLIP16.9■□□□□ 0.3
CHD3-215ENST00000572750 CCDC192P0DO97 292 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 ERCC5P28715 1186 aaPredicted RBP16.9■□□□□ 0.3
CHD3-215ENST00000572750 PCSK1P29120 753 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 HOXA9P31269 272 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 MTHFRP42898 656 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 LHX1P48742 406 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 FMO5P49326 533 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 CDH8P55286 799 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 MARSP56192 900 aaKnown RBP16.9■□□□□ 0.3
CHD3-215ENST00000572750 DUSP4Q13115 394 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 KLHL40Q2TBA0 621 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 HSP90AA4PQ58FG1 418 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 BMP8AQ7Z5Y6 402 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 OR6B3Q8NGW1 331 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 TAF4BQ92750 862 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 PKMYT1Q99640 499 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 SYT15Q9BQS2 421 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 ACBD6Q9BR61 282 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 NIF3L1Q9GZT8 377 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 SNX25Q9H3E2 840 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 DPEP3Q9H4B8 488 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 SLC27A5Q9Y2P5 690 aa16.9■□□□□ 0.3
CHD3-215ENST00000572750 PAPLNO95428 1278 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 LRG1P02750 347 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 PDGFRBP09619 1106 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 P4HA1P13674 534 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 TYRO3Q06418 890 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 TWF1Q12792 350 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 ATAT1Q5SQI0 421 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 IRF2BP1Q8IU81 584 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 RNF135Q8IUD6 432 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 CREBRFQ8IUR6 639 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 DCP1BQ8IZD4 617 aaKnown RBP16.89■□□□□ 0.29
CHD3-215ENST00000572750 CCDC150Q8NCX0 1101 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 EDAQ92838 391 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 NECTIN4Q96NY8 510 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 SEPT5Q99719 369 aaPredicted RBP16.89■□□□□ 0.29
CHD3-215ENST00000572750 CRTAC1Q9NQ79 661 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 ANO10Q9NW15 660 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 HCFC1R1Q9NWW0 138 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 RAB20Q9NX57 234 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 HMGXB4Q9UGU5 601 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 GTF3C4Q9UKN8 822 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.89■□□□□ 0.29
CHD3-215ENST00000572750 GVINP1Q7Z2Y8 2422 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 CLUHO75153 1309 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 NOTCH4Q99466 2003 aa16.89■□□□□ 0.29
CHD3-215ENST00000572750 MYBPHLA2RUH7 354 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 XYLBO75191 536 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 PTMSP20962 102 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 GNL1P36915 607 aaPredicted RBP16.88■□□□□ 0.29
CHD3-215ENST00000572750 NTHL1P78549 312 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 ORC1Q13415 861 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 UVSSAQ2YD98 709 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 GRASPQ7Z6J2 395 aaPredicted RBP16.88■□□□□ 0.29
CHD3-215ENST00000572750 MYLPFQ96A32 169 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 RPGRIP1Q96KN7 1286 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 ARID3AQ99856 593 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 LPIN3Q9BQK8 851 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 PHF7Q9BWX1 381 aaPredicted RBP16.88■□□□□ 0.29
CHD3-215ENST00000572750 BCO2Q9BYV7 579 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 RHOBTB2Q9BYZ6 727 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 DNAJC25Q9H1X3 360 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 THAP9Q9H5L6 903 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 CDH9Q9ULB4 789 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 MAFFQ9ULX9 164 aa16.88■□□□□ 0.29
CHD3-215ENST00000572750 CACNA1BQ00975 2339 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 TMEM221A6NGB7 291 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 A8MXQ7 604 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 M0R296 226 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 N4BP1O75113 896 aaKnown RBP16.87■□□□□ 0.29
CHD3-215ENST00000572750 AFPP02771 609 aaKnown RBP16.87■□□□□ 0.29
CHD3-215ENST00000572750 POU2F2P09086 479 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 CD58P19256 250 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 KCNH2Q12809 1159 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 MGAT5BQ3V5L5 792 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 MDH1BQ5I0G3 518 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 RTL10Q7L3V2 364 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 GET4Q7L5D6 327 aaPredicted RBP16.87■□□□□ 0.29
CHD3-215ENST00000572750 ASCL5Q7RTU5 278 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 SPPL2BQ8TCT7 592 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 WDR6Q9NNW5 1121 aaKnown RBP16.87■□□□□ 0.29
CHD3-215ENST00000572750 COQ4Q9Y3A0 265 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 NFE2L3Q9Y4A8 694 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 PCDHB5Q9Y5E4 795 aa16.87■□□□□ 0.29
CHD3-215ENST00000572750 FAM186AA6NE01 2351 aa16.86■□□□□ 0.29
CHD3-215ENST00000572750 DOCK8Q8NF50 2099 aa16.86■□□□□ 0.29
CHD3-215ENST00000572750 ATF6P18850 670 aa16.86■□□□□ 0.29
CHD3-215ENST00000572750 MTIF2P46199 727 aaKnown RBP16.86■□□□□ 0.29
CHD3-215ENST00000572750 VCPP55072 806 aaKnown RBP16.86■□□□□ 0.29
CHD3-215ENST00000572750 LRMPQ12912 555 aa16.86■□□□□ 0.29
CHD3-215ENST00000572750 NFE2Q16621 373 aaPredicted RBP16.86■□□□□ 0.29
CHD3-215ENST00000572750 CT47A1Q5JQC4 288 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms