RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DDX4Q9NQI0 724 aaKnown RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 ASH2LQ9UBL3 628 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ODF2LQ9ULJ1 636 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 TMEM98Q9Y2Y6 226 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ATP23Q9Y6H3 246 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 COL2A1P02458 1487 aaPredicted RBP6.83□□□□□ -1.32
VPS53-212ENST00000572259 CDK5RAP2Q96SN8 1893 aa6.83□□□□□ -1.32
VPS53-212ENST00000572259 ATRNL1Q5VV63 1379 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CCL15-CCL14A0A0B4J2E2 113 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 LRRC10BA6NIK2 292 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CXCL11O14625 94 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CD4P01730 458 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 ASNSP08243 561 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 ADD2P35612 726 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 SESN3P58005 492 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 DYNLL1P63167 89 aaKnown RBP6.82□□□□□ -1.32
VPS53-212ENST00000572259 DSG1Q02413 1049 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 TUSC3Q13454 348 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CCL15Q16663 113 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 GJC2Q5T442 439 aaPredicted RBP6.82□□□□□ -1.32
VPS53-212ENST00000572259 SWSAP1Q6NVH7 229 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 KCTD1Q719H9 257 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 TMC6Q7Z403 805 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 GALNT5Q7Z7M9 940 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 C11orf74Q86VG3 221 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 SNX32Q86XE0 403 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 COLGALT2Q8IYK4 626 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 KBTBD3Q8NAB2 608 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 DDX11Q96FC9 970 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 TSPAN17Q96FV3 270 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CENPOQ9BU64 300 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 BOCQ9BWV1 1114 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 CD244Q9BZW8 370 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 NSUN3Q9H649 340 aaKnown RBP6.82□□□□□ -1.32
VPS53-212ENST00000572259 ZNF552Q9H707 407 aaPredicted RBP6.82□□□□□ -1.32
VPS53-212ENST00000572259 ZCCHC17Q9NP64 241 aaKnown RBP6.82□□□□□ -1.32
VPS53-212ENST00000572259 EMC7Q9NPA0 242 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 ATP8A2Q9NTI2 1148 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 SRPK3Q9UPE1 567 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 HCFC2Q9Y5Z7 792 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 ZHX2Q9Y6X8 837 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 FOCADQ5VW36 1801 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 THSD7BQ9C0I4 1608 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 SSC5DA1L4H1 1573 aa6.82□□□□□ -1.32
VPS53-212ENST00000572259 FLT1P17948 1338 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 OTOFQ9HC10 1997 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 TCRBV5S2A0A599 114 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 ZNF503-AS2A6NEH8 195 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 ZNF891A8MT65 544 aaPredicted RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 FAM227AF5H4B4 570 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 MAN2B1O00754 1011 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 SCDO00767 359 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 RNF113AO15541 343 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 TAL1P17542 331 aaPredicted RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 GNAT2P19087 354 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 PSMA3P25788 255 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 UBA7P41226 1012 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 PIK3CAP42336 1068 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 MECP2P51608 486 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 YBX1P67809 324 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 SRSF3P84103 164 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 SEMA5AQ13591 1074 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 ZNF174Q15697 407 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 GLIPR1L2Q4G1C9 344 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 FIGNQ5HY92 759 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 CCDC149Q6ZUS6 474 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 ADGRA1Q86SQ6 560 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 DPP9Q86TI2 863 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 CHD1LQ86WJ1 897 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 LSMEM1Q8N8F7 131 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 FAM156AQ8NDB6 213 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 SH3RF2Q8TEC5 729 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 IPO4Q8TEX9 1081 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 ALG3Q92685 438 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 USP13Q92995 863 aaPredicted RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 EDC3Q96F86 508 aaKnown RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 UBXN10Q96LJ8 280 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 FSD1Q9BTV5 496 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 KRTAP17-1Q9BYP8 105 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 EPB41L4BQ9H329 900 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 DCP1AQ9NPI6 582 aaPredicted RBP6.81□□□□□ -1.32
VPS53-212ENST00000572259 SIRT5Q9NXA8 310 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 MCM9Q9NXL9 1143 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 NKIRAS2Q9NYR9 191 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 STAP2Q9UGK3 403 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 SERPINB13Q9UIV8 391 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 INVSQ9Y283 1065 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 CRYL1Q9Y2S2 319 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 MYH8P13535 1937 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 RFX7Q2KHR2 1363 aa6.81□□□□□ -1.32
VPS53-212ENST00000572259 BAZ2AQ9UIF9 1905 aaKnown RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 RRN3P2A6NIE6 340 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 HRKO00198 91 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 TOR1BO14657 336 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 AREL1O15033 823 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 XPOTO43592 962 aaKnown RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 PYGLP06737 847 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 VIPR1P32241 457 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms