RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NEMP1O14524 444 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 WDR46O15213 610 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 CYTH3O43739 400 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 NEMFO60524 1076 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 B3GALNT1O75752 331 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 GFPT2O94808 682 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 LUC7L3O95232 432 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 LDHAP00338 332 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 FGAP02671 866 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ATP5JP18859 108 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CASTP20810 708 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 HOXC13P31276 330 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 HIBADHP31937 336 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 HOXD12P35452 270 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CCT6AP40227 531 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 MLH1P40692 756 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TSPAN7P41732 249 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ID4P47928 161 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ADCY7P51828 1080 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 GNAI1P63096 354 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TUBA4AP68366 448 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 SULT2A1Q06520 285 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PPARAQ07869 468 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ZBTB17Q13105 803 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 IKQ13123 557 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 CRHR2Q13324 411 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 SAFB2Q14151 953 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS35-208ENST00000568612 COG2Q14746 738 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 SNCBQ16143 134 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 BCL2A1Q16548 175 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 MAN2A1Q16706 1144 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PTPROQ16827 1216 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TRIM71Q2Q1W2 868 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 C10orf76Q5T2E6 689 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 GPR158Q5T848 1215 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ADALQ6DHV7 355 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 IRGCQ6NXR0 463 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TMEM53Q6P2H8 277 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CCDC62Q6P9F0 684 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 LMBR1LQ6UX01 489 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 BZW1Q7L1Q6 419 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 DAAM2Q86T65 1068 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 RNF180Q86T96 592 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CXorf67Q86X51 503 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 CEP57Q86XR8 500 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 THNSL2Q86YJ6 484 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 LSMEM2Q8N112 164 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 LRRC43Q8N309 656 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ZNF808Q8N4W9 903 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 RNF10Q8N5U6 811 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 APPL2Q8NEU8 664 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PPP1R14CQ8TAE6 165 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 DEPTORQ8TB45 409 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 WDR66Q8TBY9 1149 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CACTINQ8WUQ7 758 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 ANKRD49Q8WVL7 239 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS35-208ENST00000568612 RABGGTAQ92696 567 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 NKD2Q969F2 451 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 ZNF653Q96CK0 615 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 IL17RAQ96F46 866 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CTAGE1Q96RT6 745 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CGREF1Q99674 301 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 NAP1L4Q99733 375 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 ZNF341Q9BYN7 854 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PUS3Q9BZE2 481 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 XPO4Q9C0E2 1151 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 YIPF3Q9GZM5 350 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PITHD1Q9GZP4 211 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 ZHX3Q9H4I2 956 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 C14orf93Q9H972 538 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 AGO3Q9H9G7 860 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 SPC25Q9HBM1 224 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CASS4Q9NQ75 786 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TLR9Q9NR96 1032 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 AASDHPPTQ9NRN7 309 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 AATFQ9NY61 560 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS35-208ENST00000568612 MYO1AQ9UBC5 1043 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ORC3Q9UBD5 711 aaPredicted RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 STK39Q9UEW8 545 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 TBK1Q9UHD2 729 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 DDX20Q9UHI6 824 aaKnown RBP3.53□□□□□ -1.84
VPS35-208ENST00000568612 GTF3C4Q9UKN8 822 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 DAAM1Q9Y4D1 1078 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 FAM169AQ9Y6X4 670 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CASZ1Q86V15 1759 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CDC42BPAQ5VT25 1732 aa3.53□□□□□ -1.85
VPS35-208ENST00000568612 ANKRD50Q9ULJ7 1429 aa3.53□□□□□ -1.85
VPS35-208ENST00000568612 KIF14Q15058 1648 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 KIF7Q2M1P5 1343 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 SAMD9Q5K651 1589 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 hCG_2014768A0A024R1R8 64 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 A0A0B4J203 849 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 GTPBP10A4D1E9 387 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 B4DLN1 442 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 H0Y3Z8 333 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 SHOX2O60902 331 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 ULK1O75385 1050 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 RASSF9O75901 435 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms