RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 DPEP3Q9H4B8 488 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 ACP6Q9NPH0 428 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 FAM49BQ9NUQ9 324 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 NAGPAQ9UK23 515 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLK3-214ENST00000564096 PPP2R2CQ9Y2T4 447 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 NT5C1B-RDH14C9J2C7 533 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 OAZ2O95190 189 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 SOD2P04179 222 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 PDGFRBP09619 1106 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 SETSIPP0DME0 302 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 PTPN1P18031 435 aaKnown RBP13.6□□□□□ -0.23
CLK3-214ENST00000564096 ACAT1P24752 427 aaKnown RBP13.6□□□□□ -0.23
CLK3-214ENST00000564096 CTNNB1P35222 781 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 GLUD2P49448 558 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 VAV2P52735 878 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 SNX16P57768 344 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 CENPCQ03188 943 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 CNGA2Q16280 664 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 CLEC16AQ2KHT3 1053 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 CTXN3Q4LDR2 81 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 ARHGAP29Q52LW3 1261 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 LCLAT1Q6UWP7 414 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 C4orf50Q6ZRC1 276 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 TMEM173Q86WV6 379 aaPredicted RBP13.6□□□□□ -0.23
CLK3-214ENST00000564096 PASD1Q8IV76 773 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 CTNNBL1Q8WYA6 563 aaPredicted RBP13.6□□□□□ -0.23
CLK3-214ENST00000564096 CLP1Q92989 425 aaKnown RBP13.6□□□□□ -0.23
CLK3-214ENST00000564096 PLVAPQ9BX97 442 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 LHX5Q9H2C1 402 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 TSPAN16Q9UKR8 245 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 INTUQ9ULD6 942 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 SSX2IPQ9Y2D8 614 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 ADGRG1Q9Y653 693 aa13.6□□□□□ -0.23
CLK3-214ENST00000564096 KRT86O43790 486 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 MICAL2O94851 1124 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 CYP1A1P04798 512 aaPredicted RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 H2AFZP0C0S5 128 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 MYBL1P10243 752 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 CHRNB2P17787 502 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 IGFBP6P24592 240 aaPredicted RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 LMO2P25791 158 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 MAGEA1P43355 309 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 NOMO3P69849 1222 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 CYP27A1Q02318 531 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 BST2Q10589 180 aaKnown RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 SMARCB1Q12824 385 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 KIF5AQ12840 1032 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 NFE2Q16621 373 aaPredicted RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 MDH1BQ5I0G3 518 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 C9orf50Q5SZB4 431 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 NAA35Q5VZE5 725 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 H2AFVQ71UI9 128 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 DDX53Q86TM3 631 aaKnown RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 RNF168Q8IYW5 571 aaPredicted RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 C1orf131Q8NDD1 294 aaKnown RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 SLC30A5Q8TAD4 765 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 MYCBPAPQ8TBZ2 947 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 KIAA1524Q8TCG1 905 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 BCL7CQ8WUZ0 217 aaPredicted RBP13.59□□□□□ -0.23
CLK3-214ENST00000564096 TFAP2BQ92481 460 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 CYFIP2Q96F07 1278 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 SAMD11Q96NU1 681 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 MED10Q9BTT4 135 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 GPR62Q9BZJ7 368 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 SYNCQ9H7C4 482 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 KCND1Q9NSA2 647 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 STRIP2Q9ULQ0 834 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 PCDHA13Q9Y5I0 950 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 PCDHA11Q9Y5I1 949 aa13.59□□□□□ -0.23
CLK3-214ENST00000564096 RTN2O75298 545 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 FGF18O76093 207 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 CALB1P05937 261 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 FAM200BP0CF97 657 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 CCDC130P13994 396 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 CPB1P15086 417 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 ADORA2BP29275 332 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 CDH5P33151 784 aaPredicted RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 PLCB3Q01970 1234 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 SHHQ15465 462 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 RAB30Q15771 203 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 PSMD5Q16401 504 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 RTP2Q5QGT7 225 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 PPP1R26Q5T8A7 1209 aaPredicted RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 LIN9Q5TKA1 542 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 FAM35AQ86V20 835 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 SPATA2LQ8IUW3 424 aaPredicted RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 GPR65Q8IYL9 337 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 CCAR2Q8N163 923 aaKnown RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 OR10T2Q8NGX3 314 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 SLC2A14Q8TDB8 520 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 RIN2Q8WYP3 895 aaPredicted RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 PIK3R5Q8WYR1 880 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 MYLPFQ96A32 169 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 SMARCD1Q96GM5 515 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 HNRNPABQ99729 332 aaKnown RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 GDF15Q99988 308 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 C11orf84Q9BUA3 381 aaPredicted RBP13.58□□□□□ -0.24
CLK3-214ENST00000564096 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLK3-214ENST00000564096 KRT82Q9NSB4 513 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms