RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GPATCH2LQ9NWQ4 482 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ANAPC5Q9UJX4 755 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ASTN1O14525 1302 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 USP27XA6NNY8 438 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 F8VP50 259 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 POC1B-GALNT4F8VUJ3 575 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 KRT7P08729 469 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ETFBP38117 255 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 GGCXP38435 758 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 CBX1P83916 185 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 CLUL1Q15846 466 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 RAD9BQ6WBX8 426 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 RHOT1Q8IXI2 618 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 EMILIN2Q9BXX0 1053 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 EDEM3Q9BZQ6 932 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 CDC23Q9UJX2 597 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 TSPAN1O60635 241 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 TJP3O95049 919 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 GJB6O95452 261 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 TUSC3Q13454 348 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 TMCO2Q7Z6W1 182 aaPredicted RBP9.72□□□□□ -0.85
VPS39-205ENST00000562258 VPS52Q8N1B4 723 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 TC2NQ8N9U0 490 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 ZSWIM2Q8NEG5 633 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 THAP2Q9H0W7 228 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 WDCPQ9H6R7 721 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 EPB41L5Q9HCM4 733 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 SMYD2Q9NRG4 433 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 EHD2Q9NZN4 543 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 DSEQ9UL01 958 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 FARP1Q9Y4F1 1045 aaPredicted RBP9.72□□□□□ -0.85
VPS39-205ENST00000562258 CDY1Q9Y6F8 540 aa9.72□□□□□ -0.85
VPS39-205ENST00000562258 A0A0B4J269 797 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 CLDN5O00501 218 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 BCAT1P54687 386 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 ST8SIA6P61647 398 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 FPGSQ05932 587 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 DUSP4Q13115 394 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 DDR2Q16832 855 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 EFHC1Q5JVL4 640 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 CES5AQ6NT32 575 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 TSHZ1Q6ZSZ6 1077 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 DCLK2Q8N568 766 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 ST13P5Q8NFI4 369 aaPredicted RBP9.71□□□□□ -0.85
VPS39-205ENST00000562258 GRK7Q8WTQ7 553 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 AUTS2Q8WXX7 1259 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 RMDN1Q96DB5 314 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 ASIC4Q96FT7 647 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 DDX47Q9H0S4 455 aaKnown RBP9.71□□□□□ -0.85
VPS39-205ENST00000562258 TPRP12270 2363 aaKnown RBP9.71□□□□□ -0.85
VPS39-205ENST00000562258 CNMDO75829 334 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 ECEL1O95672 775 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 F2P00734 622 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 CST3P01034 146 aaPredicted RBP9.71□□□□□ -0.85
VPS39-205ENST00000562258 ZNF235Q14590 738 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 NCAPHQ15003 741 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 PSMD5Q16401 504 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 KRT71Q3SY84 523 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 NUDT18Q6ZVK8 323 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 TADA2BQ86TJ2 420 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 TMEM192Q8IY95 271 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 GABPB2Q8TAK5 448 aaPredicted RBP9.71□□□□□ -0.85
VPS39-205ENST00000562258 DONSONQ9NYP3 566 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 PCDH10Q9P2E7 1040 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 WDR35Q9P2L0 1181 aa9.71□□□□□ -0.85
VPS39-205ENST00000562258 UMODL1Q5DID0 1318 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 TSPAN3O60637 253 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 ARL2P36404 184 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 CLCNKBP51801 687 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 PTK7Q13308 1070 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 CDH18Q13634 790 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 USP41Q3LFD5 358 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 NT5DC1Q5TFE4 455 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 FSD1LQ9BXM9 530 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 SPG21Q9NZD8 308 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 PGAP2Q9UHJ9 254 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 MRPS23Q9Y3D9 190 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 DUSP10Q9Y6W6 482 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 UBR2Q8IWV8 1755 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 NUP188Q5SRE5 1749 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 RASSF10A6NK89 507 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 EIF3CLB5ME19 914 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 H0Y626 953 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 ATP2C2O75185 946 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 HEXIM1O94992 359 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 USP17L7P0C7H9 530 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 ACADSBP45954 432 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 CDR2Q01850 454 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 HEATR6Q6AI08 1181 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 CCDC62Q6P9F0 684 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 ATRIPQ8WXE1 791 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 RBM41Q96IZ5 413 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 EIF3CQ99613 913 aaKnown RBP9.71□□□□□ -0.86
VPS39-205ENST00000562258 PACSIN1Q9BY11 444 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 RABEP2Q9H5N1 569 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 SNX24Q9Y343 169 aa9.71□□□□□ -0.86
VPS39-205ENST00000562258 LAMB4A4D0S4 1761 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 H3BRJ5 948 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ZNF865P0CJ78 1059 aaPredicted RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 PTPN1P18031 435 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms