RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CASP10Q92851 521 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 MYLPFQ96A32 169 aa23.23■■□□□ 1.31
SNX1-210ENST00000560260 UBE2TQ9NPD8 197 aaPredicted RBP23.23■■□□□ 1.31
SNX1-210ENST00000560260 EPHB6O15197 1021 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 ZNF394Q53GI3 561 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 MDH1BQ5I0G3 518 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 IQCEQ6IPM2 695 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 ANKRD54Q6NXT1 300 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 SYCE2Q6PIF2 218 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 ACOT1Q86TX2 421 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 UNC93AQ86WB7 457 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 DCP1BQ8IZD4 617 aaKnown RBP23.22■■□□□ 1.31
SNX1-210ENST00000560260 C12orf76Q8N812 135 aaPredicted RBP23.22■■□□□ 1.31
SNX1-210ENST00000560260 B3GALNT2Q8NCR0 500 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 ERGIC2Q96RQ1 377 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 RHOBTB2Q9BYZ6 727 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 GANQ9H2C0 597 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 UBE2ZQ9H832 354 aaPredicted RBP23.22■■□□□ 1.31
SNX1-210ENST00000560260 FHOD1Q9Y613 1164 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 PTPRDP23468 1912 aa23.22■■□□□ 1.31
SNX1-210ENST00000560260 FSD2A1L4K1 749 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 RFPL2O75678 378 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 NOL4O94818 638 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 SERPINC1P01008 464 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 PTPN1P18031 435 aaKnown RBP23.21■■□□□ 1.31
SNX1-210ENST00000560260 KLHDC7AQ5VTJ3 777 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 EP400NLQ6ZTU2 488 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 SLC4A11Q8NBS3 891 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 SLC7A14Q8TBB6 771 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 MYCBPAPQ8TBZ2 947 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 MSLNLQ96KJ4 702 aa23.21■■□□□ 1.31
SNX1-210ENST00000560260 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.2■■□□□ 1.3
SNX1-210ENST00000560260 NCK2O43639 380 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 SOAT2O75908 522 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 C8AP07357 584 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 RAD23BP54727 409 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 TCEAL8Q8IYN2 117 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 CRYBG2Q8N1P7 616 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 PCED1BQ96HM7 432 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 NT5C1AQ9BXI3 368 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 PLEKHA4Q9H4M7 779 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 CYP4F11Q9HBI6 524 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 PLCB1Q9NQ66 1216 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 DZANK1Q9NVP4 752 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 ABI2Q9NYB9 513 aaPredicted RBP23.2■■□□□ 1.3
SNX1-210ENST00000560260 CDH22Q9UJ99 828 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 DNAJC12Q9UKB3 198 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 YIPF1Q9Y548 306 aa23.2■■□□□ 1.3
SNX1-210ENST00000560260 H3BQ06 376 aaPredicted RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 RNF225M0QZC1 329 aaPredicted RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 DUSP4Q13115 394 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 NR1I3Q14994 352 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 NFE2Q16621 373 aaPredicted RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 ARHGAP44Q17R89 818 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 C12orf29Q8N999 325 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 HDAC7Q8WUI4 952 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 APOL5Q9BWW9 433 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 NAA15Q9BXJ9 866 aaKnown RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 B3GNT5Q9BYG0 378 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 FAM124BQ9H5Z6 455 aaPredicted RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 FAM207AQ9NSI2 230 aaPredicted RBP23.19■■□□□ 1.3
SNX1-210ENST00000560260 IFNKQ9P0W0 207 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 SLC27A5Q9Y2P5 690 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 PCDHB5Q9Y5E4 795 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 INSL5Q9Y5Q6 135 aa23.19■■□□□ 1.3
SNX1-210ENST00000560260 CLDN5O00501 218 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 AP5Z1O43299 807 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 ZMYND10O75800 440 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 CALCAP01258 141 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 PNMA6AP0CW24 399 aaPredicted RBP23.18■■□□□ 1.3
SNX1-210ENST00000560260 CCDC130P13994 396 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 UCHL3P15374 230 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 ZNF132P52740 706 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 YWHAEP62258 255 aaKnown RBP23.18■■□□□ 1.3
SNX1-210ENST00000560260 CLUL1Q15846 466 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 FILIP1LQ4L180 1135 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 LIN9Q5TKA1 542 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 TMEM270Q6UE05 265 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 PAQR9Q6ZVX9 377 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 TTC39CQ8N584 583 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 SPPL2BQ8TCT7 592 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 SHC3Q92529 594 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 ZNF707Q96C28 371 aaPredicted RBP23.18■■□□□ 1.3
SNX1-210ENST00000560260 TNIP3Q96KP6 325 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 ZNF518BQ9C0D4 1074 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 GPR88Q9GZN0 384 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 FAM49BQ9NUQ9 324 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 TMEM30AQ9NV96 361 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 CNTN6Q9UQ52 1028 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 PCDHB4Q9Y5E5 795 aa23.18■■□□□ 1.3
SNX1-210ENST00000560260 PRRG1O14668 218 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 PAPLNO95428 1278 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 HAPLN1P10915 354 aaPredicted RBP23.17■■□□□ 1.3
SNX1-210ENST00000560260 KCNA5P22460 613 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 CYP2F1P24903 491 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 GPR15P49685 360 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 CACNA2D1P54289 1103 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 CYP27A1Q02318 531 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 RARS2Q5T160 578 aaKnown RBP23.17■■□□□ 1.3
SNX1-210ENST00000560260 FUKQ8N0W3 1084 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms