RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 FGD4Q96M96 766 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 MFSD14AQ96MC6 490 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 RBM14Q96PK6 669 aaKnown RBP5.37□□□□□ -1.55
TMEM260-210ENST00000556422 ALPK1Q96QP1 1244 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 SELENOOQ9BVL4 669 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 FOXP3Q9BZS1 431 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 THAP2Q9H0W7 228 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 C17orf75Q9HAS0 396 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 UBE2TQ9NPD8 197 aaPredicted RBP5.37□□□□□ -1.55
TMEM260-210ENST00000556422 EMC3Q9P0I2 261 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 STIM2Q9P246 746 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 SEPT9Q9UHD8 586 aaPredicted RBP5.37□□□□□ -1.55
TMEM260-210ENST00000556422 NOCTQ9UK39 431 aaKnown RBP5.37□□□□□ -1.55
TMEM260-210ENST00000556422 HPCAL4Q9UM19 191 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 CAPN7Q9Y6W3 813 aa5.37□□□□□ -1.55
TMEM260-210ENST00000556422 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SOWAHBA6NEL2 793 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 M0QX08 132 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 AGPSO00116 658 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CES2O00748 559 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 BUB1BO60566 1050 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 NBNO60934 754 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CNMDO75829 334 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SYF2O95926 243 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PDGFRBP09619 1106 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CHRNB2P17787 502 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 UBA1P22314 1058 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 MOGSQ13724 837 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CRY1Q16526 586 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 INO80DQ53TQ3 878 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 C15orf39Q6ZRI6 1047 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 DDX42Q86XP3 938 aaKnown RBP eCLIP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 METTL13Q8N6R0 699 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CCDC63Q8NA47 563 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 USP38Q8NB14 1042 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SLC17A8Q8NDX2 589 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CHST13Q8NET6 341 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 GOT1L1Q8NHS2 421 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SLC35G2Q8TBE7 412 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SHC3Q92529 594 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TRIM8Q9BZR9 551 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 DHX33Q9H6R0 707 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 VIPAS39Q9H9C1 493 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PIH1D1Q9NWS0 290 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 RNF14Q9UBS8 474 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PTPRJQ12913 1337 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 A0A0G2JLL6 359 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TTC34A8MYJ7 566 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TTI1O43156 1089 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 KCNJ13O60928 360 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 FARP2O94887 1054 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TMEM253P0C7T8 217 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SKIP12755 728 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TNFRSF8P28908 595 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 HNF1BP35680 557 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 AARSP49588 968 aaKnown RBP eCLIP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CCT8P50990 548 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 HLTFQ14527 1009 aaKnown RBP eCLIP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TRADDQ15628 312 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 KCTD19Q17RG1 926 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 C15orf59Q2T9L4 293 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 WDR44Q5JSH3 913 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 ARHGEF18Q6ZSZ5 1173 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 MOB2Q70IA6 237 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PRRT2Q7Z6L0 340 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 RIOX2Q8IUF8 465 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 FAM71AQ8IYT1 594 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TAS1R2Q8TE23 839 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 RFFLQ8WZ73 363 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CCDC127Q96BQ5 260 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 ZNF653Q96CK0 615 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PCDHB18PQ96TA0 734 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 ISCUQ9H1K1 167 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TXNRD2Q9NNW7 524 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SQORQ9Y6N5 450 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PLXNB2O15031 1838 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 GSTTP1A0A1W2PQM5 241 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 TMEM247A6NEH6 219 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SPECC1L-ADORA2AF8WAN1 911 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 EBAG9O00559 213 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 KCNK3O14649 394 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 HNRNPDLO14979 420 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CLTAP09496 248 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 NCAM1P13591 858 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 ABCB4P21439 1286 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 FUT4P22083 530 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 GPC3P51654 580 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 RNASE9P60153 205 aaKnown RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CLDN10P78369 228 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 CYP24A1Q07973 514 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 ACTN3Q08043 901 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 EMC2Q15006 297 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 PPP1R7Q15435 360 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 STXBP2Q15833 593 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 BRDTQ58F21 947 aaPredicted RBP5.36□□□□□ -1.55
TMEM260-210ENST00000556422 NLRP9Q7RTR0 991 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 SLC47A2Q86VL8 602 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 VPS36Q86VN1 386 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 IFNL1Q8IU54 200 aa5.36□□□□□ -1.55
TMEM260-210ENST00000556422 RASGEF1CQ8N431 466 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms