RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NLRC4Q9NPP4 1024 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 TMLHEQ9NVH6 421 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 CEP72Q9P209 647 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 GTF3C4Q9UKN8 822 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 TSC2P49815 1807 aa13.04□□□□□ -0.32
SHMT2-209ENST00000553949 TRANK1O15050 2925 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 F8VZ95 297 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 RNF225M0QZC1 329 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 FOXN3O00409 490 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 TGM5O43548 720 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 ABLIM3O94929 683 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 GLUD1P00367 558 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 PNMA6AP0CW24 399 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 USP8P40818 1118 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 CLCN4P51793 760 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 JAM2P57087 298 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MAPRE1Q15691 268 aaKnown RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 NFE2Q16621 373 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MDH1BQ5I0G3 518 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 TPGS2Q68CL5 300 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 SPECC1LQ69YQ0 1117 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 RNF19BQ6ZMZ0 732 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 CACNA2D4Q7Z3S7 1137 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 FAM71AQ8IYT1 594 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 C12orf29Q8N999 325 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 ZNF461Q8TAF7 563 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 SLC22A17Q8WUG5 538 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MYLPFQ96A32 169 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 PCED1BQ96HM7 432 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MRFAP1L1Q96HT8 127 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 HEXIM2Q96MH2 286 aaKnown RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 PGLYRP2Q96PD5 576 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 SPAG5Q96R06 1193 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 CDCA3Q99618 268 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-209ENST00000553949 LPIN3Q9BQK8 851 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 TTYH3Q9C0H2 523 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 GRPEL1Q9HAV7 217 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MTMR10Q9NXD2 777 aa13.03□□□□□ -0.32
SHMT2-209ENST00000553949 MTMR11A4FU01 709 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 CYP26A1O43174 497 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 VNN2O95498 520 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 C1RP00736 705 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 PAEPP09466 180 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 ATF2P15336 505 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 GTF2F1P35269 517 aaKnown RBP eCLIP13.02□□□□□ -0.33
SHMT2-209ENST00000553949 SOX5P35711 763 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 CDR1P51861 262 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 CYP27A1Q02318 531 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 HYAL1Q12794 435 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 SMARCB1Q12824 385 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 LILRA6Q6PI73 481 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 SPATA2LQ8IUW3 424 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-209ENST00000553949 ATAD1Q8NBU5 361 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 C2orf15Q8WU43 125 aaKnown RBP13.02□□□□□ -0.33
SHMT2-209ENST00000553949 BAP1Q92560 729 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 IQCDQ96DY2 449 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 EDEM3Q9BZQ6 932 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 IGFLR1Q9H665 355 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 AFF4Q9UHB7 1163 aaKnown RBP13.02□□□□□ -0.33
SHMT2-209ENST00000553949 KIAA1257Q9ULG3 409 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 MAFFQ9ULX9 164 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 PCDHB5Q9Y5E4 795 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.02□□□□□ -0.33
SHMT2-209ENST00000553949 HCFC2Q9Y5Z7 792 aa13.02□□□□□ -0.33
SHMT2-209ENST00000553949 A0A1W2PQJ5 194 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 ADCY5O95622 1261 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 GYPCP04921 128 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 SPATA31D3P0C874 917 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 VDRP11473 427 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CCDC130P13994 396 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CD19P15391 556 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 FOSL2P15408 326 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 EPCAMP16422 314 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CLCN1P35523 988 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 STAT1P42224 750 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 ADCY1Q08828 1119 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 C4orf50Q6ZRC1 276 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 SPATA31D4Q6ZUB0 917 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 MICALL1Q8N3F8 863 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 VN1R2Q8NFZ6 395 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 SLC2A14Q8TDB8 520 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CPLX3Q8WVH0 158 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CYFIP2Q96F07 1278 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 B3GNT5Q9BYG0 378 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 ABCB6Q9NP58 842 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 ACP6Q9NPH0 428 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 FAM49BQ9NUQ9 324 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 ABI2Q9NYB9 513 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-209ENST00000553949 FBXW11Q9UKB1 542 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 MYO6Q9UM54 1294 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CAPN11Q9UMQ6 739 aa13.01□□□□□ -0.33
SHMT2-209ENST00000553949 CLDN5O00501 218 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 GFPT2O94808 682 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 SEC24AO95486 1093 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 CALCAP01258 141 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 BRD2P25440 801 aaKnown RBP13□□□□□ -0.33
SHMT2-209ENST00000553949 ELF1P32519 619 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 BPIFB4P59827 614 aa13□□□□□ -0.33
SHMT2-209ENST00000553949 RBM10P98175 930 aaKnown RBP13□□□□□ -0.33
SHMT2-209ENST00000553949 PTK2Q05397 1052 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms