RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 SIX1Q15475 284 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PTGISQ16647 500 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PPP1R26Q5T8A7 1209 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 DCUN1D2Q6PH85 259 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 NT5DC4Q86YG4 428 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SLC13A5Q86YT5 568 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 EGFL6Q8IUX8 553 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 KLHDC9Q8NEP7 349 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 ATG4AQ8WYN0 398 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 RIN2Q8WYP3 895 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SRRDQ9UH36 339 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 TSPAN16Q9UKR8 245 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CEP83Q9Y592 693 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SCINQ9Y6U3 715 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CCDC188H7C350 402 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 M0QZ92 97 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 POLR3GO15318 223 aaPredicted RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 DAPK3O43293 454 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 GHRP10912 638 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 MCM3P25205 808 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 PSMC1P62191 440 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 PPP1R15BQ5SWA1 713 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 APBB1IPQ7Z5R6 666 aaPredicted RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 IFT20Q8IY31 132 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 OR6B3Q8NGW1 331 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 C1orf54Q8WWF1 131 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 METTL5Q9NRN9 209 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 HPCAL4Q9UM19 191 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 MED7O43513 233 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 MGEA5O60502 916 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 KPNA6O60684 536 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 PFKMP08237 780 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 ECHS1P30084 290 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 CD52P31358 61 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 MLH1P40692 756 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 GPD2P43304 727 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 GYS2P54840 703 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 SNX1Q13596 522 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 GOLGA7BQ2TAP0 167 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 RAB6CQ53S08 254 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 SGO2Q562F6 1265 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 CCDC50Q8IVM0 306 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 RNF25Q96BH1 459 aaPredicted RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 NT5C1AQ9BXI3 368 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 RAB6CQ9H0N0 254 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 SYNCQ9H7C4 482 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 MIOSQ9NXC5 875 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 UBQLN1Q9UMX0 589 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 DERAQ9Y315 318 aa13.48□□□□□ -0.25
VIPAS39-206ENST00000553888 PIRO00625 290 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 MYCP01106 439 aaPredicted RBP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 OAS2P29728 719 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 PDCLQ13371 301 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 MAP9Q49MG5 647 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 XYLT1Q86Y38 959 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 RNF169Q8NCN4 708 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 MAGOHBQ96A72 148 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 GAD1Q99259 594 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 LHX5Q9H2C1 402 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 PTPN22Q9Y2R2 807 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 ATP8B1O43520 1251 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 GRAP2O75791 330 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 STAU1O95793 577 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 VDRP11473 427 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 FLT3P36888 993 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 ADCY2Q08462 1091 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 MGAT3Q09327 533 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 HLTFQ14527 1009 aaKnown RBP eCLIP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 PCBP1Q15365 356 aaKnown RBP eCLIP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 FBXO47Q5MNV8 452 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 TTC30AQ86WT1 665 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 KBTBD7Q8WVZ9 684 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 ZNF518BQ9C0D4 1074 aa13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 R3HDM2Q9Y2K5 976 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-206ENST00000553888 CCDC130P13994 396 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 DR1Q01658 176 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 ARFGAP1Q8N6T3 406 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 C3orf20Q8ND61 904 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 GSTCDQ8NEC7 633 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 RAET1EQ8TD07 263 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 UBXN6Q9BZV1 441 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 CHST7Q9NS84 486 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 FAM105AQ9NUU6 356 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 KPNA7A9QM74 516 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 E5RJQ4 531 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 RALAP11233 206 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 SLC1A1P43005 524 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 EPHB4P54760 987 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 CNGA2Q16280 664 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 SMTNL2Q2TAL5 461 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 XKR4Q5GH76 650 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 ZFYVE27Q5T4F4 411 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 PAAF1Q9BRP4 392 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 SLITRK6Q9H5Y7 841 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 IP6K2Q9UHH9 426 aa13.46□□□□□ -0.25
VIPAS39-206ENST00000553888 TDRD15B5MCY1 1934 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 GOLGA6L10A0A0M3HER8 536 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 A8MXQ7 604 aa13.46□□□□□ -0.26
VIPAS39-206ENST00000553888 PHF2O75151 1096 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms