RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ADH6P28332 368 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 SCNN1GP51170 649 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 AMPD3Q01432 767 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 PRKCEQ02156 737 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 DSC1Q08554 894 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 SLC5A9Q2M3M2 681 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 RTP2Q5QGT7 225 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 PPM1LQ5SGD2 360 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 UBXN11Q5T124 520 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 WWC2Q6AWC2 1192 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 SCARA3Q6AZY7 606 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 OVOS1Q6IE37 1185 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 TCEAL6Q6IPX3 200 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 FUT10Q6P4F1 479 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 Q6ZS52 159 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 MRPL10Q7Z7H8 261 aaKnown RBP7.25□□□□□ -1.25
LIMA1-204ENST00000549064 LONP2Q86WA8 852 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 RHPN2Q8IUC4 686 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 IL22RA1Q8N6P7 574 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 IGDCC4Q8TDY8 1250 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 FAM3CQ92520 227 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 TCEAL3Q969E4 200 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 FAM167AQ96KS9 214 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 GAD1Q99259 594 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF577Q9BSK1 485 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 SCNM1Q9BWG6 230 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 AVENQ9NQS1 362 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-204ENST00000549064 RBM12Q9NTZ6 932 aaKnown RBP7.25□□□□□ -1.25
LIMA1-204ENST00000549064 CACNA2D2Q9NY47 1150 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 FNIP2Q9P278 1114 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 DNMT3BQ9UBC3 853 aaKnown RBP7.25□□□□□ -1.25
LIMA1-204ENST00000549064 REV1Q9UBZ9 1251 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 RCAN3Q9UKA8 241 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 PCDHA10Q9Y5I2 948 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 KIF26AQ9ULI4 1882 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 LINC01387J3KSC0 135 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ADAMTS3O15072 1205 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ADAM12O43184 909 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 DNAJA2O60884 412 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ECI2O75521 394 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 RGS9O75916 674 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ASMTLO95671 621 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CYP21A2P08686 494 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 HNRNPA1P09651 372 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ARAFP10398 606 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CHRNB1P11230 501 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SNRPBP14678 240 aaKnown RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CEBPBP17676 345 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 PLCG1P19174 1290 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 FCARP24071 287 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SMARCA1P28370 1054 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CNR2P34972 360 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SREBF1P36956 1147 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 MLH1P40692 756 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SART3Q15020 963 aaKnown RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 C21orf62-AS1Q17RA5 79 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 USP41Q3LFD5 358 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 PABPC1LQ4VXU2 614 aaKnown RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 LIN9Q5TKA1 542 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 RNF43Q68DV7 783 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 KIAA1211LQ6NV74 962 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 C19orf48Q6RUI8 117 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 NIPA1Q7RTP0 329 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 RALYLQ86SE5 291 aaKnown RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 KBTBD6Q86V97 674 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SMAP1Q8IYB5 467 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SMG8Q8ND04 991 aaKnown RBP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 SLC7A14Q8TBB6 771 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 DNASE1L2Q92874 299 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 NLRP4Q96MN2 994 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CEP89Q96ST8 783 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 MDFIQ99750 246 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CLSTN3Q9BQT9 956 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CORO1BQ9BR76 489 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 LZTS2Q9BRK4 669 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 BRD9Q9H8M2 597 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 RIC8AQ9NPQ8 531 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-204ENST00000549064 NRBP2Q9NSY0 501 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 AGPAT5Q9NUQ2 364 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 TCEAL9Q9UHQ7 104 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 PCDHB10Q9UN67 800 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 HES2Q9Y543 173 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 PIAS3Q9Y6X2 628 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ATG2BQ96BY7 2078 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 CNTNAP2Q9UHC6 1331 aa7.24□□□□□ -1.25
LIMA1-204ENST00000549064 ARL5CA6NH57 179 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 C4orf47A7E2U8 309 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 E7EWF7 191 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MAN2B1O00754 1011 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 EPN2O95208 641 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 C1RP00736 705 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 CTSBP07858 339 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 ITGA4P13612 1032 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 LIG1P18858 919 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 CCNE1P24864 410 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MAOBP27338 520 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MASP1P48740 699 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 PXNP49023 591 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 GNAQP50148 359 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms