RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CGRRF1Q99675 332 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 BAG1Q99933 345 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 MSTO1Q9BUK6 570 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 GCOM2Q9BZD3 368 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 SENP6Q9GZR1 1112 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS29-203ENST00000546588 CDT1Q9H211 546 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 PCIF1Q9H4Z3 704 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 IGFLR1Q9H665 355 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 YY1AP1Q9H869 796 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 GCNT4Q9P109 453 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 APEX2Q9UBZ4 518 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 OGDHLQ9ULD0 1010 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 AKT3Q9Y243 479 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 FNDC1Q4ZHG4 1894 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 SCN1AP35498 2009 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 INO80B-WBP1J3KQ70 363 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 MEFVO15553 781 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 IL18RAPO95256 599 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 C4BPAP04003 597 aaKnown RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 SRGAP2CP0DJJ0 459 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 KRT9P35527 623 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 GRIA4P48058 902 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 CDK7P50613 346 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 ADKP55263 362 aaKnown RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 IGBP1P78318 339 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 GCNT1Q02742 428 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 SPRED3Q2MJR0 410 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 XKR4Q5GH76 650 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 DCAF17Q5H9S7 520 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 SNAP47Q5SQN1 464 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 E4F1Q66K89 784 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 HGSNATQ68CP4 663 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 GDF6Q6KF10 455 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 NOTUMQ6P988 496 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 PDXDC1Q6P996 788 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 SLC27A1Q6PCB7 646 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 CXCL17Q6UXB2 119 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 CD302Q8IX05 232 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 CCDC170Q8IYT3 715 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 NEK11Q8NG66 645 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 OLIG1Q8TAK6 271 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 MICAL1Q8TDZ2 1067 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 TMEM40Q8WWA1 233 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 SAAL1Q96ER3 474 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 TRIM11Q96F44 468 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 BICD1Q96G01 975 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 ZBTB45Q96K62 511 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 HHIPQ96QV1 700 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 SLC30A3Q99726 388 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 SYT11Q9BT88 431 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 GPR88Q9GZN0 384 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 ASB7Q9H672 318 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 RBAKQ9NYW8 714 aaPredicted RBP9.07□□□□□ -0.96
VPS29-203ENST00000546588 PYCARDQ9ULZ3 195 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 NENFQ9UMX5 172 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 DERAQ9Y315 318 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 C2CD2Q9Y426 696 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 TRIM17Q9Y577 477 aa9.07□□□□□ -0.96
VPS29-203ENST00000546588 PTPRJQ12913 1337 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 PATJQ8NI35 1801 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 PTPRDP23468 1912 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 SCN5AQ14524 2016 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 KRTAP9-6A0A140TA67 174 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 A0A1W2PQ45 241 aaPredicted RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 A0A1W2PQY0 241 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 B4GALT5O43286 388 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 GFPT2O94808 682 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 PF4P02776 101 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 TRIM49P0CI25 452 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 TRIM49CP0CI26 452 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 SLC9A1P19634 815 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 LIG3P49916 1009 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 MRPS6P82932 125 aaKnown RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 MLLT1Q03111 559 aaPredicted RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 CETN1Q12798 172 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ITGA7Q13683 1181 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 PTPN21Q16825 1174 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ZNF568Q3ZCX4 644 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ZBTB41Q5SVQ8 909 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 TCERG1LQ5VWI1 586 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 EEF1DP3Q658K8 133 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ALKAL1Q6UXT8 129 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 CYP26C1Q6V0L0 522 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ENOSF1Q7L5Y1 443 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 USP38Q8NB14 1042 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ARRDC4Q8NCT1 418 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 FBXL13Q8NEE6 735 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ZNF397Q8NF99 534 aaPredicted RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 CPLX3Q8WVH0 158 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 DNAJB3Q8WWF6 145 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 WNT8BQ93098 351 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 EAF1Q96JC9 268 aaPredicted RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 SEC16BQ96JE7 1060 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 MDFIQ99750 246 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 FAM213AQ9BRX8 229 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 CELF4Q9BZC1 486 aaKnown RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 CEP44Q9C0F1 390 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 INTS2Q9H0H0 1204 aaKnown RBP9.06□□□□□ -0.96
VPS29-203ENST00000546588 PLEKHA5Q9HAU0 1116 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms