RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	TRIM11	Q96F44	468 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	RSRC1	Q96IZ7	334 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ACO2	Q99798	780 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MINDY3	Q9H8M7	445 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	FAM47DP	A6NHR8	397 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	PI4K2B	G5E9Z4	385 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ZSCAN5DP	P0CG00	497 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	OSBP	P22059	807 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	BRD2	P25440	801 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	EPHX2	P34913	555 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	BPIFB4	P59827	614 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	IL9R	Q01113	521 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ORC1	Q13415	861 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MOGS	Q13724	837 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ATP13A4	Q4VNC1	1196 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ZFYVE27	Q5T4F4	411 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	EEF1DP3	Q658K8	133 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	RNF43	Q68DV7	783 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ABRA	Q8N0Z2	381 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	BBOF1	Q8ND07	529 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	SPOCK2	Q92563	424 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MAML1	Q92585	1016 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MPHOSPH6	Q99547	160 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	SAYSD1	Q9NPB0	183 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	DONSON	Q9NYP3	566 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	NXF1	Q9UBU9	619 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	PTPRF	P10586	1907 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	EXOC1L	A0A1B0GW35	172 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	PSTPIP1	O43586	416 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	KRT10	P13645	584 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	GCA	P28676	217 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	EFNA5	P52803	228 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	PTP4A2	Q12974	167 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	DNAJC3	Q13217	504 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	MAMLD1	Q13495	774 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	NAA25	Q14CX7	972 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	GPAT2	Q6NUI2	795 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	CAPN12	Q6ZSI9	719 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ERICH1	Q86X53	443 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	BRSK2	Q8IWQ3	736 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	PPP1R13L	Q8WUF5	828 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	FAM167A	Q96KS9	214 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	KIF9	Q9HAQ2	790 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	NOP53	Q9NZM5	478 aa	Known RBP	13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	POC1B-GALNT4	F8VUJ3	575 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	DIAPH2	O60879	1101 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	IQCF3	P0C7M6	154 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	NOMO3	P69849	1222 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	PPIL2	Q13356	520 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	TRPC3	Q13507	836 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	FASTKD3	Q14CZ7	662 aa	Known RBP	13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ZPBP2	Q6X784	338 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ZNF677	Q86XU0	584 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	RELL1	Q8IUW5	271 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	KATNAL2	Q8IYT4	538 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ZCCHC9	Q8N567	271 aa	Known RBP	13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ZNF606	Q8WXB4	792 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ADAM33	Q9BZ11	813 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ETNK1	Q9HBU6	452 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	ACTL7B	Q9Y614	415 aa		13.19	□□□□□ -0.3
RNF4-222	ENST00000541204	OTOF	Q9HC10	1997 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204		A0A1B0GUA9	196 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	TLR3	O15455	904 aa	Known RBP	13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	FAM189A1	O60320	539 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	UNC5C	O95185	931 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CCNB1	P14635	433 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ETS1	P14921	441 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	TCF4	P15884	667 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CCND1	P24385	295 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	RAP1GAP	P47736	663 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	MXD4	Q14582	209 aa	Predicted RBP	13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	LIN9	Q5TKA1	542 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ATF7IP2	Q5U623	682 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	DPY19L2	Q6NUT2	758 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.18	□□□□□ -0.3	2e-6	■■■■■ 41.6
RNF4-222	ENST00000541204	MRRF	Q96E11	262 aa	Known RBP	13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	MYLK2	Q9H1R3	596 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	SLCO1B3	Q9NPD5	702 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	DNPEP	Q9ULA0	475 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	KCNH4	Q9UQ05	1017 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	PAPPA2	Q9BXP8	1791 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	DNAJC25-GNG10	A0A024R161	153 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	OGT	O15294	1046 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ASMTL	O95671	621 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	TMEM191B	P0C7N4	346 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ZNF286B	P0CG31	522 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CXCL8	P10145	99 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	RPL7A	P62424	266 aa	Known RBP	13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ACVR2B	Q13705	512 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CCDC62	Q6P9F0	684 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	TRABD2A	Q86V40	505 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	EXD1	Q8NHP7	514 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	ACSF2	Q96CM8	615 aa	Predicted RBP	13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	GRAMD1A	Q96CP6	724 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CFAP57	Q96MR6	1250 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	SYT17	Q9BSW7	474 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	CISH	Q9NSE2	258 aa		13.18	□□□□□ -0.3
RNF4-222	ENST00000541204	PHTF1	Q9UMS5	762 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms