RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MFN1Q8IWA4 741 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 UBXN6Q9BZV1 441 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 DNAJC17Q9NVM6 304 aaKnown RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 BARX2Q9UMQ3 279 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 A0A087WUV0 522 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 F5H423 210 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ATP1A2P50993 1020 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ARSEP51690 589 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 OCRLQ01968 901 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 PTPN11Q06124 597 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 FMR1Q06787 632 aaKnown RBP eCLIP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 BRSK2Q8IWQ3 736 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 PPM1NQ8N819 430 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 PPTC7Q8NI37 304 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 RNPC3Q96LT9 517 aaKnown RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 OSBPL9Q96SU4 736 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ZFATQ9P243 1243 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ADGRG1Q9Y653 693 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 MAPK13O15264 365 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ANXA9O76027 345 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 APLP1P51693 650 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 POU5F1BQ06416 359 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 DMAP1Q9NPF5 467 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 GTF3C4Q9UKN8 822 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 VPS9D1Q9Y2B5 631 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SLCO1A2P46721 670 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 MYL6P60660 151 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 NOMO2Q5JPE7 1267 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 TIGD7Q6NT04 549 aaPredicted RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 CARNMT1Q8N4J0 409 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 ERGIC2Q96RQ1 377 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 PAK5Q9P286 719 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 TRIM66O15016 1216 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 GSTA4O15217 222 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 LZTS3O60299 673 aaPredicted RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 YWHAQP27348 245 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 MAP3K7CLP57077 242 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 FSTL1Q12841 308 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 PDIA2Q13087 525 aaKnown RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 ACAD10Q6JQN1 1059 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 ANKS3Q6ZW76 656 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 FGD4Q96M96 766 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 CAPS2Q9BXY5 557 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 CIPCQ9C0C6 399 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 STK39Q9UEW8 545 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 COL1A2P08123 1366 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 RHOCP08134 193 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 IZUMO3Q5VZ72 239 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 NAPEPLDQ6IQ20 393 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 CCDC60Q8IWA6 550 aaPredicted RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 APBB2Q92870 758 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 GAD1Q99259 594 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 INTUQ9ULD6 942 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 RGS4P49798 205 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 CDR2Q01850 454 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 NOL9Q5SY16 702 aaKnown RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 SPATS2Q86XZ4 545 aaKnown RBP14.87□□□□□ -0.03
COLCA1-204ENST00000540738 TRIM48Q8IWZ4 208 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 NSMCE4AQ9NXX6 385 aa14.87□□□□□ -0.03
COLCA1-204ENST00000540738 ATP8B1O43520 1251 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 EIF2B5Q13144 721 aaKnown RBP14.86□□□□□ -0.03
COLCA1-204ENST00000540738 TBCCQ15814 346 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 NBPF20Q3BBV1 942 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 RETSATQ6NUM9 610 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 VPS28Q9UK41 221 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 CNTNAP2Q9UHC6 1331 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 PYGLP06737 847 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 TRIM65Q6PJ69 517 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 LINC00523Q86TU6 105 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 AGAP3Q96P47 875 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 CISHQ9NSE2 258 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 RWDD3Q9Y3V2 267 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 ZMYND10O75800 440 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 KDELC2Q7Z4H8 507 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 BHMTQ93088 406 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 TSPAN18Q96SJ8 248 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 RECQL4O94761 1208 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 SESN2P58004 480 aaPredicted RBP14.86□□□□□ -0.03
COLCA1-204ENST00000540738 C1orf54Q8WWF1 131 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 PDGFDQ9GZP0 370 aaPredicted RBP14.86□□□□□ -0.03
COLCA1-204ENST00000540738 EPS15L1Q9UBC2 864 aa14.86□□□□□ -0.03
COLCA1-204ENST00000540738 MOXD2PA6NHM9 499 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 TLR2O60603 784 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 MAFO75444 373 aaPredicted RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 SELPP16109 830 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 VCLP18206 1134 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 TKTL1P51854 596 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 GRIN1Q05586 938 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 DSG4Q86SJ6 1040 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 CRLF3Q8IUI8 442 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 WDR75Q8IWA0 830 aaKnown RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 GPATCH11Q8N954 259 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 DDX20Q9UHI6 824 aaKnown RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 SEPT4O43236 478 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 HIF1AQ16665 826 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 SPATA16Q9BXB7 569 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 A0A0G2JLL6 359 aaPredicted RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 FGBP02675 491 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms