RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 IGHA2P01877 340 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 KRT19P08727 400 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 SMIM10L2AP0DMW4 78 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 SMIM10L2BP0DMW5 78 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 CDH8P55286 799 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 GSCP56915 257 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-210ENST00000538120 CUL1Q13616 776 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 KIZQ2M2Z5 673 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 SEL1L2Q5TEA6 688 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 DAB2IPQ5VWQ8 1189 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 YTHDF3Q7Z739 585 aaKnown RBP11.37□□□□□ -0.59
CLIP1-210ENST00000538120 ZNF410Q86VK4 478 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 TRIM51Q9BSJ1 452 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 OSBPL7Q9BZF2 842 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 CXCL16Q9H2A7 254 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 ASB7Q9H672 318 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 PCDHGC3Q9UN70 934 aa11.37□□□□□ -0.59
CLIP1-210ENST00000538120 MANSC4A6NHS7 340 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 GOLGA6L10A6NI86 522 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 O00370 1275 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 DNM1LO00429 736 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 CREB3O43889 395 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 PHF2O75151 1096 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 ITGB3P05106 788 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 RARAP10276 462 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 HSPA6P17066 643 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 HOXA11P31270 313 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 CDH5P33151 784 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 SLC1A1P43005 524 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 TMEM62Q0P6H9 643 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 TAF1CQ15572 869 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 RUFY4Q6ZNE9 571 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 MICALCLQ6ZW33 695 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 CCDC91Q7Z6B0 441 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 SPATS2Q86XZ4 545 aaKnown RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 C1orf131Q8NDD1 294 aaKnown RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 C18orf8Q96DM3 657 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 HERPUD2Q9BSE4 406 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 KRTAP3-3Q9BYR6 98 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 KRTAP3-2Q9BYR7 98 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 NOVA2Q9UNW9 492 aaKnown RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 GOLGA6L10A0A0M3HER8 536 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 MBLAC1A4D2B0 266 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 GMNCA6NCL1 334 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 FSCN2O14926 492 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 PARNO95453 639 aaKnown RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 LSM8O95777 96 aaKnown RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 IBSPP21815 317 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 RAD23BP54727 409 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 TAS2R40P59535 323 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 ADAM17P78536 824 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 DR1Q01658 176 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 SF3A3Q12874 501 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 PPP2R5EQ16537 467 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 CYP1B1Q16678 543 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 KYAT1Q16773 422 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 WDR72Q3MJ13 1102 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 DUPD1Q68J44 220 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 DENND1BQ6P3S1 775 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 TWNKQ96RR1 684 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 FAM49AQ9H0Q0 323 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 SMYD3Q9H7B4 428 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 VRTNQ9H8Y1 702 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 PLSCR2Q9NRY7 297 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-210ENST00000538120 GJD2Q9UKL4 321 aa11.36□□□□□ -0.59
CLIP1-210ENST00000538120 HAS3O00219 553 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TRAPPC3O43617 180 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 RASSF9O75901 435 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 BYSLQ13895 437 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ODF2Q5BJF6 829 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ZNF667Q5HYK9 610 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 PPP1R2P3Q6NXS1 205 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 LRIG3Q6UXM1 1119 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TLK2Q86UE8 772 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 FEZF2Q8TBJ5 459 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 FAXDC2Q96IV6 333 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 SCLT1Q96NL6 688 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TRIM31Q9BZY9 425 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 DPH5Q9H2P9 285 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 MRPL47Q9HD33 250 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 SLC40A1Q9NP59 571 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 KLC4Q9NSK0 619 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 HMGXB4Q9UGU5 601 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 PCYOX1Q9UHG3 505 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 FAM187AA6NFU0 413 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TMEM191CA6NGB0 347 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TLR3O15455 904 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ATP2C2O75185 946 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 CYP2B6P20813 491 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ATICP31939 592 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 CHRNA3P32297 505 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 GRM5P41594 1212 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 MAGOHP61326 146 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 RPL7AP62424 266 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ZNF252P-AS1Q0IIN9 211 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ORC1Q13415 861 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 DHX34Q14147 1143 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TMEM132DQ14C87 1099 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms