RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SPPL2BQ8TCT7 592 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 JAKMIP2Q96AA8 810 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 FUBP3Q96I24 572 aaKnown RBP eCLIP15.44■□□□□ 0.06
CPSF1-206ENST00000531480 NT5C1BQ96P26 610 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ASB2Q96Q27 587 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ARID3AQ99856 593 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 INTS2Q9H0H0 1204 aaKnown RBP15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ADAM7Q9H2U9 754 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 CRISPLD1Q9H336 500 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 SIX2Q9NPC8 291 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 GCNT4Q9P109 453 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 CD207Q9UJ71 328 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 CNTN6Q9UQ52 1028 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 GREB1Q4ZG55 1949 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 DOCK6Q96HP0 2047 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 MYBPHLA2RUH7 354 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 A8MXQ7 604 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ATP2C2O75185 946 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 C8AP07357 584 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 PTPN1P18031 435 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ACO1P21399 889 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 NDST1P52848 882 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 COPB1P53618 953 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 MRPS5P82675 430 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 KCNMA1Q12791 1236 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 SMAD4Q13485 552 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 PUS10Q3MIT2 529 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 GPR149Q86SP6 731 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 CREBRFQ8IUR6 639 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ATAD1Q8NBU5 361 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 B3GALNT2Q8NCR0 500 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 SLC7A14Q8TBB6 771 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ADAMTS19Q8TE59 1207 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ATXN2LQ8WWM7 1075 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 ANP32BQ92688 251 aaKnown RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 TNIP3Q96KP6 325 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 NECAB3Q96P71 396 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-206ENST00000531480 PRKD2Q9BZL6 878 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 DPEP3Q9H4B8 488 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.43■□□□□ 0.067e-6■■■■■ 74.5
CPSF1-206ENST00000531480 CISHQ9NSE2 258 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 TAB2Q9NYJ8 693 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 HMGXB4Q9UGU5 601 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 GTF3C4Q9UKN8 822 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 INSL5Q9Y5Q6 135 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 TTC28Q96AY4 2481 aa15.43■□□□□ 0.06
CPSF1-206ENST00000531480 LGALS16A8MUM7 142 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 BECN2A8MW95 431 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 H3BQ06 376 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-206ENST00000531480 MBTPS2O43462 519 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 RFPL2O75678 378 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 PDGFRBP09619 1106 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 SLC9A1P19634 815 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 MAGEA11P43364 429 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 KCNQ1P51787 676 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 ARPP19P56211 112 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 CCDC142Q17RM4 750 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 LIN9Q5TKA1 542 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 LUZP1Q86V48 1076 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 ARHGEF19Q8IW93 802 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 ANKRD20A12PQ8NF67 263 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 FEZF2Q8TBJ5 459 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 PCED1BQ96HM7 432 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 FAM81BQ96LP2 452 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 KREMEN1Q96MU8 473 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 TWNKQ96RR1 684 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 CRACR2AQ9BSW2 395 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 APEX2Q9UBZ4 518 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 PCDHB5Q9Y5E4 795 aa15.42■□□□□ 0.06
CPSF1-206ENST00000531480 PATJQ8NI35 1801 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 CCDC195A0A1B0GUA6 201 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 GOLGA6L3A6NEY3 463 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 GRXCR2A6NFK2 248 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 HAPLN1P10915 354 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 ELF1P32519 619 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 TUFMP49411 452 aaKnown RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 PSMC1P62191 440 aaKnown RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 YWHAEP62258 255 aaKnown RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 DUSP4Q13115 394 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 SMAD2Q15796 467 aaKnown RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 AAK1Q2M2I8 961 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 PPM1LQ5SGD2 360 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 C4orf50Q6ZRC1 276 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 ENOSF1Q7L5Y1 443 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 TTC9BQ8N6N2 239 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 C12orf76Q8N812 135 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 KAT5Q92993 513 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 CEP295NLQ96MC4 621 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 PGLYRP2Q96PD5 576 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 ERGIC2Q96RQ1 377 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 UHRF1Q96T88 793 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 NT5C1AQ9BXI3 368 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 ELOVL4Q9GZR5 314 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 VPS16Q9H269 839 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 TSPY26PQ9H489 355 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 CYP4F11Q9HBI6 524 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 PLCB1Q9NQ66 1216 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 AVENQ9NQS1 362 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-206ENST00000531480 YIPF1Q9Y548 306 aa15.41■□□□□ 0.06
CPSF1-206ENST00000531480 TPM2P07951 284 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms