RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 RDH13Q8NBN7 331 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 LINC00301Q8NCQ3 95 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 MRPS31Q92665 395 aaKnown RBP13.97□□□□□ -0.17
CPSF1-204ENST00000529288 MSANTD3Q96H12 275 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 TRPC7Q9HCX4 862 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 GKN1Q9NS71 199 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 GTF3C4Q9UKN8 822 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 ITGA11Q9UKX5 1188 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 USP18Q9UMW8 372 aa13.97□□□□□ -0.17
CPSF1-204ENST00000529288 FRMD3A2A2Y4 597 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 MYBPHLA2RUH7 354 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 ZNF233A6NK53 670 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CHURC1-FNTBB4DL54 471 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 HSP90AA1P07900 732 aaKnown RBP13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CSH1P0DML2 217 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CSH2P0DML3 217 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CTHP32929 405 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 FNTBP49356 437 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 NLRP12P59046 1061 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 RPL10AP62906 217 aaKnown RBP13.96□□□□□ -0.17
CPSF1-204ENST00000529288 FOXK2Q01167 660 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 AMPD3Q01432 767 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 GAS6Q14393 721 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CCDC142Q17RM4 750 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 INTS6LQ5JSJ4 861 aaKnown RBP13.96□□□□□ -0.17
CPSF1-204ENST00000529288 C1orf228Q6PIY5 440 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 Q6ZS52 159 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 DGLUCYQ7Z3D6 616 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 RALGPS2Q86X27 583 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CBWD2Q8IUF1 395 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 CMTM8Q8IZV2 173 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 TMEM86AQ8N2M4 240 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 OR5B17Q8NGF7 314 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 ACBD6Q9BR61 282 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 FAM126AQ9BYI3 521 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-204ENST00000529288 TNMDQ9H2S6 317 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 OBP2AQ9NY56 170 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 GMEB2Q9UKD1 530 aa13.96□□□□□ -0.17
CPSF1-204ENST00000529288 LILRB5O75023 590 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 CLSTN1O94985 981 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 F11P03951 625 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 PDGFRBP09619 1106 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 HMGA1P17096 107 aaKnown RBP13.95□□□□□ -0.18
CPSF1-204ENST00000529288 LHX1P48742 406 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 PLCB2Q00722 1185 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 DMWDQ09019 674 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 MYO1EQ12965 1108 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 RSPO4Q2I0M5 234 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-204ENST00000529288 ITPRIPL2Q3MIP1 535 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 DGKKQ5KSL6 1271 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 TRIM68Q6AZZ1 485 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 CC2D1AQ6P1N0 951 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-204ENST00000529288 ERMP1Q7Z2K6 904 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 NELFCDQ8IXH7 590 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 SPEM1Q8N4L4 309 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 IQUBQ8NA54 791 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 SPRYD3Q8NCJ5 442 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 HPDLQ96IR7 371 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 MMS19Q96T76 1030 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 IER2Q9BTL4 223 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 TRIM9Q9C026 710 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 EPC1Q9H2F5 836 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 EBF3Q9H4W6 596 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 INTS13Q9NVM9 706 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 HSPBP1Q9NZL4 362 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 SIX4Q9UIU6 781 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 CCL26Q9Y258 94 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 MIA3Q5JRA6 1907 aa13.95□□□□□ -0.18
CPSF1-204ENST00000529288 CLIC2O15247 247 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 CUTAO60888 179 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 PPP6R2O75170 966 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 ATP2C2O75185 946 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 DLATP10515 647 aaKnown RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 PCSK1P29120 753 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 CASP1P29466 404 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 CYP2J2P51589 502 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 MLLT6P55198 1093 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 PSMC1P62191 440 aaKnown RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 SRSF5Q13243 272 aaKnown RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 SURF1Q15526 300 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 DUOXA2Q1HG44 320 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 SOWAHAQ2M3V2 549 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 TMEM150AQ86TG1 271 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 TOP6BLQ8N6T0 577 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 NELL1Q92832 810 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 USP13Q92995 863 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 BLZF1Q9H2G9 400 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 TDP1Q9NUW8 608 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 KBTBD4Q9NVX7 518 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 GDAP2Q9NXN4 497 aa13.94□□□□□ -0.18
CPSF1-204ENST00000529288 MORC2Q9Y6X9 1032 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-204ENST00000529288 PTPRJQ12913 1337 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 KIAA0391O15091 583 aaKnown RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 POLR2DO15514 142 aaKnown RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 TDGF1P13385 188 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 ARSAP15289 507 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 TNNI1P19237 187 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 LMO2P25791 158 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 DDX6P26196 483 aaKnown RBP eCLIP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 WEE1P30291 646 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms