RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 REEP2Q9BRK0 252 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 RNPEPQ9H4A4 650 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 LRCH1Q9Y2L9 728 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 CNTNAP4Q9C0A0 1308 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 PPP1R3GB7ZBB8 358 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 OMA1Q96E52 524 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 ILKAPQ9H0C8 392 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 EFCAB1Q9HAE3 211 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 RXFP1Q9HBX9 757 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 RNF146Q9NTX7 359 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 A0A0G2JLW4 131 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 DYTNA2CJ06 578 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 MAPRE1Q15691 268 aaKnown RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 KLHDC7AQ5VTJ3 777 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 LRRC6Q86X45 466 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 RBBP8NLQ8NC74 664 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 ZNF668Q96K58 619 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 PLEKHA5Q9HAU0 1116 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 MOSPD1Q9UJG1 213 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 DUSP10Q9Y6W6 482 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 SETD1BQ9UPS6 1966 aaKnown RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 TRPC5OSA6NMA1 111 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 SERPINB8P50452 374 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 CDK17Q00537 523 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 RABL6Q3YEC7 729 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 BNC2Q6ZN30 1099 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 TERB1Q8NA31 727 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 LINC00116Q8NCU8 138 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 SH3KBP1Q96B97 665 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 TUFT1Q9NNX1 390 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 BTBD7Q9P203 1132 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 ZMYND8Q9ULU4 1186 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-214ENST00000515035 SOX13Q9UN79 622 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 ADGRA3Q8IWK6 1321 aa13.84□□□□□ -0.19
TCOF1-214ENST00000515035 CSTF3Q12996 717 aaKnown RBP13.83□□□□□ -0.19
TCOF1-214ENST00000515035 EZH2Q15910 746 aaKnown RBP13.83□□□□□ -0.19
TCOF1-214ENST00000515035 KBTBD12Q3ZCT8 623 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 TWF2Q6IBS0 349 aaKnown RBP13.83□□□□□ -0.19
TCOF1-214ENST00000515035 CENPPQ6IPU0 288 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 FLCNQ8NFG4 579 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 OTUD5Q96G74 571 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 ANKZF1Q9H8Y5 726 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 RSAD1Q9HA92 442 aa13.83□□□□□ -0.19
TCOF1-214ENST00000515035 RAVER2Q9HCJ3 691 aaKnown RBP13.83□□□□□ -0.19
TCOF1-214ENST00000515035 NEXMIFQ5QGS0 1516 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 H0YC42 278 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 TFE3P19532 575 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ATP1A4Q13733 1029 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 TRMT5Q32P41 509 aaKnown RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 AARS2Q5JTZ9 985 aaKnown RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ELMSAN1Q6PJG2 1045 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 RIN3Q8TB24 985 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 BTN2A2Q8WVV5 523 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 MPP4Q96JB8 637 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 TMEM51Q9NW97 253 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 IMPAD1Q9NX62 359 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 PCDHB2Q9Y5E7 798 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 A0A087X0T9 212 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 FAM228BP0C875 321 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 DDX5P17844 614 aaKnown RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 GTF2H3Q13889 308 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 DCAF4L1Q3SXM0 396 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 EFHC1Q5JVL4 640 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 SNX30Q5VWJ9 437 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 LPCAT2Q7L5N7 544 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 FBXO25Q8TCJ0 367 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 DNAJC7Q99615 494 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ECSITQ9BQ95 431 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ZSWIM1Q9BR11 485 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 NDEL1Q9GZM8 345 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 UBAP1Q9NZ09 502 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 CHORDC1Q9UHD1 332 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 SLC39A10Q9ULF5 831 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 SESN1Q9Y6P5 492 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 PSMD3O43242 534 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 SERPINB5P36952 375 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 TRIM25Q14258 630 aaKnown RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 C16orf72Q14CZ0 275 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 JADE3Q92613 823 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ZNF669Q96BR6 464 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 FRMD8Q9BZ67 464 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-214ENST00000515035 RIC8BQ9NVN3 520 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 NAGPAQ9UK23 515 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 ITM2BQ9Y287 266 aa13.83□□□□□ -0.2
TCOF1-214ENST00000515035 SPDYE5A6NIY4 337 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 PRPF4O43172 522 aaKnown RBP eCLIP13.82□□□□□ -0.2
TCOF1-214ENST00000515035 MYL3P08590 195 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 DMPKQ09013 629 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 LAMC2Q13753 1193 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 RASA2Q15283 850 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 SPDYE7PQ495Y7 208 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 FAM71DQ8N9W8 422 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 DIS3LQ8TF46 1054 aaKnown RBP13.82□□□□□ -0.2
TCOF1-214ENST00000515035 ZCWPW1Q9H0M4 648 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 TAGLN3Q9UI15 199 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 MCM8Q9UJA3 840 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 DIP2AQ14689 1571 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 FAM196BA6NMK8 535 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 F5H6K3 240 aa13.82□□□□□ -0.2
TCOF1-214ENST00000515035 MYBP10242 640 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms