RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ACTR5Q9H9F9 607 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 WHRNQ9P202 907 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 AGO2Q9UKV8 859 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 A0A0B4J269 797 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 DCDC2CA8MYV0 355 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 CHRNA1P02708 482 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 SHBGP04278 402 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 RARAP10276 462 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 HARSP12081 509 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 ARF4P18085 180 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 MMP13P45452 471 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 BPIFB4P59827 614 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 PCBP1Q15365 356 aaKnown RBP eCLIP17.01■□□□□ 0.312e-6■■□□□ 12.6
SQSTM1-213ENST00000510187 MPZL3Q6UWV2 235 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 C15orf39Q6ZRI6 1047 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 SV2AQ7L0J3 742 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 TRMT10CQ7L0Y3 403 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 CDR2LQ86X02 465 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 CPB2Q96IY4 423 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 XPO6Q96QU8 1125 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 TMEM106CQ9BVX2 250 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 MCOLN1Q9GZU1 580 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 PTPRHQ9HD43 1115 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 TNFSF13BQ9Y275 285 aa17.01■□□□□ 0.31
SQSTM1-213ENST00000510187 RGS16O15492 202 aaPredicted RBP17■□□□□ 0.31
SQSTM1-213ENST00000510187 EXTL3O43909 919 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 PROZP22891 400 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 ATN1P54259 1190 aaPredicted RBP17■□□□□ 0.31
SQSTM1-213ENST00000510187 CLDN10P78369 228 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 MCL1Q07820 350 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 ZNF568Q3ZCX4 644 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 MFSD5Q6N075 450 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 CACNA2D3Q8IZS8 1091 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 FAM213AQ9BRX8 229 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 ROPN1BQ9BZX4 212 aaPredicted RBP17■□□□□ 0.31
SQSTM1-213ENST00000510187 ROPN1Q9HAT0 212 aaPredicted RBP17■□□□□ 0.31
SQSTM1-213ENST00000510187 C1orf112Q9NSG2 853 aa17■□□□□ 0.31
SQSTM1-213ENST00000510187 ABLIM1O14639 778 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 RIPK2O43353 540 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 LDHAP00338 332 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 UNGP13051 313 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 ACTN3Q08043 901 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 MGAT3Q09327 533 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 PTP4A2Q12974 167 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 CALCOCO2Q13137 446 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 TRIM71Q2Q1W2 868 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 TNFAIP8L3Q5GJ75 292 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 GKAP1Q5VSY0 366 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 EEF1DP3Q658K8 133 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 PPP1R2P3Q6NXS1 205 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 CCDC121Q6ZUS5 278 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 TAX1BP1Q86VP1 789 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 FAM126BQ8IXS8 530 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 ANKLE1Q8NAG6 615 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 DIS3LQ8TF46 1054 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 CHMP6Q96FZ7 201 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 PDZD7Q9H5P4 517 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 CCDC134Q9H6E4 229 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 TOPORSQ9NS56 1045 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 CAPN7Q9Y6W3 813 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 A0A1B0GUA9 196 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 TCRBV7S2A1N4TA0A589 114 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 PQBP1O60828 265 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 DRD4P21917 467 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 ACOT2P49753 483 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 IFT88Q13099 833 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 SLC29A2Q14542 456 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 RNF187Q5TA31 235 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 SLC39A5Q6ZMH5 540 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 GRK7Q8WTQ7 553 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 SEC16BQ96JE7 1060 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 BTBD6Q96KE9 485 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 ACP6Q9NPH0 428 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 PCDHB2Q9Y5E7 798 aa16.99■□□□□ 0.31
SQSTM1-213ENST00000510187 MROH7Q68CQ1 1323 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 COL6A1P12109 1028 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 CKBP12277 381 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 KRT5P13647 590 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 HOXA11P31270 313 aaPredicted RBP16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 CAV1Q03135 178 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 PSMD6Q15008 389 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 PPP1R7Q15435 360 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 SEZ6Q53EL9 994 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 SGO2Q562F6 1265 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 ZNF618Q5T7W0 954 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 TRIM72Q6ZMU5 477 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 FAM228AQ86W67 206 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 MCOLN2Q8IZK6 566 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 POP1Q99575 1024 aaKnown RBP16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 ADPGKQ9BRR6 497 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 CDT1Q9H211 546 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 SEMA4AQ9H3S1 761 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 LRRC4CQ9HCJ2 640 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 HOMER3Q9NSC5 361 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 CHORDC1Q9UHD1 332 aaPredicted RBP16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 ANAPC7Q9UJX3 599 aa16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.98■□□□□ 0.31
SQSTM1-213ENST00000510187 OGTO15294 1046 aa16.97■□□□□ 0.31
SQSTM1-213ENST00000510187 ITIH2P19823 946 aa16.97■□□□□ 0.31
SQSTM1-213ENST00000510187 CENPCQ03188 943 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms