RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TLR9Q9NR96 1032 aa5.26□□□□□ -1.57
NUP54-206ENST00000508465 PARPBPQ9NWS1 579 aa5.26□□□□□ -1.57
NUP54-206ENST00000508465 PLA2G3Q9NZ20 509 aa5.26□□□□□ -1.57
NUP54-206ENST00000508465 DDX20Q9UHI6 824 aaKnown RBP5.26□□□□□ -1.57
NUP54-206ENST00000508465 ZMYND8Q9ULU4 1186 aaPredicted RBP5.26□□□□□ -1.57
NUP54-206ENST00000508465 REXO2Q9Y3B8 237 aaKnown RBP5.26□□□□□ -1.57
NUP54-206ENST00000508465 GREB1LQ9C091 1923 aaPredicted RBP5.26□□□□□ -1.57
NUP54-206ENST00000508465 ZNFX1Q9P2E3 1918 aaKnown RBP5.26□□□□□ -1.57
NUP54-206ENST00000508465 MYH4Q9Y623 1939 aa5.26□□□□□ -1.57
NUP54-206ENST00000508465 RANBP2P49792 3224 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 RAD50Q92878 1312 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 COL11A1P12107 1806 aaPredicted RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 SMCHD1A6NHR9 2005 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PTPDC1A2A3K4 754 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 KLRF2D3W0D1 207 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 SEPT4O43236 478 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PRC1O43663 620 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 RAMP2O60895 175 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ICAM1P05362 532 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PARP1P09874 1014 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 SNHG28P0DPA3 235 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CPA1P15085 419 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CALML3P27482 149 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 MSX2P35548 267 aaPredicted RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 COPB2P35606 906 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 OAZ1P54368 228 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 FOXL1Q12952 345 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ACVR2BQ13705 512 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 HSP90AA2PQ14568 343 aaPredicted RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 WTAPQ15007 396 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 NECTIN1Q15223 517 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 LRRC41Q15345 812 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 SLC35G1Q2M3R5 365 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CCDC144BQ3MJ40 725 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CCDC178Q5BJE1 867 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 HABP4Q5JVS0 413 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 FNDC7Q5VTL7 733 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 MRM1Q6IN84 353 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 DPY19L2P1Q6NXN4 242 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 USP30Q70CQ3 517 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 NOL8Q76FK4 1167 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 CXXC5Q7LFL8 322 aaKnown RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 NLGN4XQ8N0W4 816 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 FAM133AQ8N9E0 248 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 TCEANC2Q96MN5 208 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 MYL10Q9BUA6 226 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 HTATIP2Q9BUP3 242 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ZDHHC5Q9C0B5 715 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ACBD3Q9H3P7 528 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CCSER2Q9H7U1 834 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ACAD9Q9H845 621 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 JMJD4Q9H9V9 463 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PDGFCQ9NRA1 345 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 CYP39A1Q9NYL5 469 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PRKAG3Q9UGI9 489 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 FBXO40Q9UH90 709 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 MAD2L2Q9UI95 211 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ZHX1Q9UKY1 873 aaPredicted RBP5.25□□□□□ -1.57
NUP54-206ENST00000508465 CNPY2Q9Y2B0 182 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 GIT1Q9Y2X7 761 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PCSK5Q92824 1860 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 PDE4DIPQ5VU43 2346 aa5.25□□□□□ -1.57
NUP54-206ENST00000508465 ASTN1O14525 1302 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 PFASO15067 1338 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 A0A1W2PQU0 124 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 hCG_1642624A0A1W2PR95 340 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ERICH2A1L162 156 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 MYADML2A6NDP7 307 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ADCY6O43306 1168 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 CDC45O75419 566 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 SOD2P04179 222 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 RARBP10826 455 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 RXRAP19793 462 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 KCNQ1P51787 676 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 GPR85P60893 370 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 RPS6P62753 249 aaKnown RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 BEX3Q00994 111 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 DUSP8Q13202 625 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 GRM7Q14831 915 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 CDC37Q16543 378 aaPredicted RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 QRICH1Q2TAL8 776 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 TKFCQ3LXA3 575 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ADCK5Q3MIX3 580 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ASPRV1Q53RT3 343 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 GPATCH4Q5T3I0 446 aaKnown RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 BTBD8Q5XKL5 378 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 SLC30A10Q6XR72 485 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ARMCX2Q7L311 632 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 DPH6Q7L8W6 267 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 CATIPQ7Z7H3 387 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 ADGRE4PQ86SQ3 457 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 MB21D2Q8IYB1 491 aaPredicted RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 NCOA7Q8NI08 942 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 WDR48Q8TAF3 677 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 NUP133Q8WUM0 1156 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 LY9Q9HBG7 655 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 CAPN10Q9HC96 672 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 XPNPEP3Q9NQH7 507 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms