RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 MED19A0JLT2 244 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 EXTL3O43909 919 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 HUS1O60921 280 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 F11P03951 625 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 HMGA1P17096 107 aaKnown RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 NASPP49321 788 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 NLRP12P59046 1061 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 PLCB2Q00722 1185 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 MYL7Q01449 175 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 DMWDQ09019 674 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 STK38Q15208 465 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 LPAL2Q16609 132 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 NFE2Q16621 373 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CCDC142Q17RM4 750 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 RSPO4Q2I0M5 234 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 INTS6LQ5JSJ4 861 aaKnown RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 DGKKQ5KSL6 1271 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 SDHAF4Q5VUM1 108 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 OSTM1Q86WC4 334 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CCDC65Q8IXS2 484 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CMTM8Q8IZV2 173 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 GPD1LQ8N335 351 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CSGALNACT2Q8N6G5 542 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CELF5Q8N6W0 485 aaKnown RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 LRRC52Q8N7C0 313 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 MAB21L3Q8N8X9 362 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 CXorf38Q8TB03 319 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 LEO1Q8WVC0 666 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 MTMR12Q9C0I1 747 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 TMEM206Q9H813 350 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 THG1LQ9NWX6 298 aaKnown RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 DLL3Q9NYJ7 618 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 SIX4Q9UIU6 781 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 GMEB2Q9UKD1 530 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 ITGA11Q9UKX5 1188 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 MAGED2Q9UNF1 606 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 SNX9Q9Y5X1 595 aa12.41□□□□□ -0.42
HMGCS1-204ENST00000507293 PTPRJQ12913 1337 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 CHURC1-FNTBB4DL54 471 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 K7ELQ4 463 aaPredicted RBP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 HCRTO43612 131 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 STX6O43752 255 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 TMEM191BP0C7N4 346 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 CSH1P0DML2 217 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 CSH2P0DML3 217 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 DDX6P26196 483 aaKnown RBP eCLIP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 AVPR1AP37288 418 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 FNTBP49356 437 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 RBP5P82980 135 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ITPRIPL2Q3MIP1 535 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 LMBRD2Q68DH5 695 aaPredicted RBP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 PRR23BQ6ZRT6 265 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ADGRF2Q8IZF7 708 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 TMEM86AQ8N2M4 240 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 GPR161Q8N6U8 529 aaKnown RBP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 GLIS3Q8NEA6 775 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 MRPS31Q92665 395 aaKnown RBP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 HPS3Q969F9 1004 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 PKMYT1Q99640 499 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ACBD6Q9BR61 282 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 TNMDQ9H2S6 317 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ZSCAN16Q9H4T2 348 aaPredicted RBP12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 GKN1Q9NS71 199 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 C2orf42Q9NWW7 574 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 GDAP2Q9NXN4 497 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ZMYM5Q9UJ78 669 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 RAB23Q9ULC3 237 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 USP18Q9UMW8 372 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 CCL26Q9Y258 94 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 ATG2BQ96BY7 2078 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 CACNA1AO00555 2505 aa12.4□□□□□ -0.42
HMGCS1-204ENST00000507293 EML5Q05BV3 1969 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 CEP250Q9BV73 2442 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 K7ESF4 209 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 TADA3O75528 432 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 NOL4O94818 638 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 PAPSS2O95340 614 aaPredicted RBP12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 CYP2F1P24903 491 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 RPL10AP62906 217 aaKnown RBP12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 SRSF5Q13243 272 aaKnown RBP12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 CCINQ13939 588 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 DDR2Q16832 855 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 TXNDC8Q6A555 127 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 HEATR6Q6AI08 1181 aaKnown RBP12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 TRIM68Q6AZZ1 485 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 LAIR1Q6GTX8 287 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 STXBP4Q6ZWJ1 553 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 CBWD2Q8IUF1 395 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 TOP6BLQ8N6T0 577 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 LINC00301Q8NCQ3 95 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 OR5B17Q8NGF7 314 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 RIN3Q8TB24 985 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 SPATA18Q8TC71 538 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 USP13Q92995 863 aaPredicted RBP12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 ANKRD36BP1Q96IX9 119 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 KIF9Q9HAQ2 790 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 ABCB6Q9NP58 842 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 PARD6AQ9NPB6 346 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 HPS4Q9NQG7 708 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 INTS13Q9NVM9 706 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms