RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 RIN3Q8TB24 985 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 SNX29Q8TEQ0 813 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 CD101Q93033 1021 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 CNOT6LQ96LI5 555 aaKnown RBP15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 SLC32A1Q9H598 525 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 DSEQ9UL01 958 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 ANAPC1Q9H1A4 1944 aa15.43■□□□□ 0.06
PRPF40A-211ENST00000493468 FAM221BA6H8Z2 402 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 UPK3BL1B0FP48 263 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 PATE3B3GLJ2 98 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 UPK3BL2E5RIL1 263 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 PPEF2O14830 753 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 HAPLN1P10915 354 aaPredicted RBP15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 HMGA1P17096 107 aaKnown RBP15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 SMTNP53814 917 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 IRX4P78413 519 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 NAIF1Q69YI7 327 aaPredicted RBP15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 MON1AQ86VX9 555 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 NECAB1Q8N987 351 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 ATP2A3Q93084 1043 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 RAB34Q9BZG1 259 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 HAPLN2Q9GZV7 340 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 ECT2Q9H8V3 914 aa15.42■□□□□ 0.06
PRPF40A-211ENST00000493468 SMG1Q96Q15 3661 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 LACTBL1A8MY62 500 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 E9PMD0 336 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 H0Y626 953 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 HYAL3O43820 417 aaPredicted RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 FAM189A1O60320 539 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 TRIM16O95361 564 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 PLS3P13797 630 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 DPP6P42658 865 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 TRAPPC10P48553 1259 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 GUCY2FP51841 1108 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 MTF1Q14872 753 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 ENOX2Q16206 610 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 ME3Q16798 604 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 TTC38Q5R3I4 469 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 CD302Q8IX05 232 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 C4orf32Q8N8J7 132 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 OSCP1Q8WVF1 389 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 MRPS31Q92665 395 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 FOXP1Q9H334 677 aaPredicted RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 TMEM206Q9H813 350 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 GCN1Q92616 2671 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 LOC400499M0QZD8 3231 aa15.41■□□□□ 0.06
PRPF40A-211ENST00000493468 H0YCG3 227 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 PIRO00625 290 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 JAK2O60674 1132 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 BCKDHBP21953 392 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 U2AF2P26368 475 aaKnown RBP eCLIP15.4■□□□□ 0.065e-7■■■■□ 19.7
PRPF40A-211ENST00000493468 NMT1P30419 496 aaKnown RBP15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 TNFSF9P41273 254 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 MATR3P43243 847 aaKnown RBP eCLIP15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 FOSBP53539 338 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 FAM160A1Q05DH4 1040 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 USP4Q13107 963 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 ZNF77Q15935 545 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 UAP1L1Q3KQV9 507 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 C9orf57Q5W0N0 161 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 TXNDC8Q6A555 127 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 KIAA1211LQ6NV74 962 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 PIP4P1Q86T03 277 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 OLIG1Q8TAK6 271 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 USP33Q8TEY7 942 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 GIPC2Q8TF65 315 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 NUSAP1Q9BXS6 441 aaKnown RBP15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 TPSD1Q9BZJ3 242 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 CCSER1Q9C0I3 900 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 DUS2Q9NX74 493 aaKnown RBP15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 KLK13Q9UKR3 277 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 DERAQ9Y315 318 aa15.4■□□□□ 0.06
PRPF40A-211ENST00000493468 CEP192Q8TEP8 1941 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 ANO9A1A5B4 782 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 SFI1A8K8P3 1242 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 TNFRSF10BO14763 440 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 OGTO15294 1046 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 CAPNS1P04632 268 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 CSH1P0DML2 217 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 CSH2P0DML3 217 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 TCF3P15923 654 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 SCP2P22307 547 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 DHPSP49366 369 aaPredicted RBP15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 ANAPC15P60006 121 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 PSMD2Q13200 908 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 SEMA3BQ13214 749 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 EML3Q32P44 896 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 TRIM61Q5EBN2 209 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 SPDYCQ5MJ68 293 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 KRT79Q5XKE5 535 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 METTL23Q86XA0 190 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 PROSER1Q86XN7 944 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 THEM5Q8N1Q8 247 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 PIGKQ92643 395 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 RPF1Q9H9Y2 349 aaKnown RBP15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 KCND2Q9NZV8 630 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 UXTQ9UBK9 157 aaPredicted RBP15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 MMP17Q9ULZ9 603 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 INVSQ9Y283 1065 aa15.39■□□□□ 0.05
PRPF40A-211ENST00000493468 IGSF10Q6WRI0 2623 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms