RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 JADE1Q6IE81 842 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 DNAJC24Q6P3W2 148 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 ALKAL1Q6UXT8 129 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 TMEM192Q8IY95 271 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 ARFGAP2Q8N6H7 521 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 SLC4A11Q8NBS3 891 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 BBOF1Q8ND07 529 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 OR6J1Q8NGC5 347 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 NPLOC4Q8TAT6 608 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 OSBPL8Q9BZF1 889 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 MIS12Q9H081 205 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 SDCBP2Q9H190 292 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 BARX2Q9UMQ3 279 aaPredicted RBP11.36□□□□□ -0.59
USP4-214ENST00000491791 AKT3Q9Y243 479 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 DRG1Q9Y295 367 aaKnown RBP11.36□□□□□ -0.59
USP4-214ENST00000491791 NDC80O14777 642 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 GAS8O95995 478 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 KRT14P02533 472 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 INHAP05111 366 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 FAM163BP0C2L3 166 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 ZNF286BP0CG31 522 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 ZNF865P0CJ78 1059 aaPredicted RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 BRD2P25440 801 aaKnown RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 HOXA11P31270 313 aaPredicted RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 IRAK1P51617 712 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 PMS2P54278 862 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 IGBP1P78318 339 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 PTPN11Q06124 597 aaPredicted RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 NFX1Q12986 1120 aaKnown RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 TMEM132DQ14C87 1099 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 WDR72Q3MJ13 1102 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 XKR4Q5GH76 650 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 TNFAIP8L3Q5GJ75 292 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 CEP85LQ5SZL2 805 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 LEKR1Q6ZMV7 388 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 CEP128Q6ZU80 1094 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 TRMT10CQ7L0Y3 403 aaKnown RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 UBE2Q1Q7Z7E8 422 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 PASD1Q8IV76 773 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 CCDC105Q8IYK2 499 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 LRRC52Q8N7C0 313 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 FBXO25Q8TCJ0 367 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 KAT2BQ92831 832 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 TLCD1Q96CP7 247 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 FAM212AQ96EL1 285 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 MCRS1Q96EZ8 462 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 PGM2Q96G03 612 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 TMEM176AQ96HP8 235 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 ADPGKQ9BRR6 497 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 HERPUD2Q9BSE4 406 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 CAPS2Q9BXY5 557 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 GCOM2Q9BZD3 368 aaPredicted RBP11.35□□□□□ -0.59
USP4-214ENST00000491791 UNC93B1Q9H1C4 597 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 DPH5Q9H2P9 285 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 CALCOCO1Q9P1Z2 691 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 GABRQQ9UN88 632 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP4-214ENST00000491791 SNX24Q9Y343 169 aa11.35□□□□□ -0.59
USP4-214ENST00000491791 GOLGA6L10A6NI86 522 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 O00370 1275 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 TCEA3O75764 348 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 ITGB3P05106 788 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 SETSIPP0DME0 302 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 CD58P19256 250 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 GPD2P43304 727 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 PLTPP55058 493 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 RPL7AP62424 266 aaKnown RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 NKX3-2P78367 333 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 CBLBQ13191 982 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 BYSLQ13895 437 aaKnown RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 ZSCAN26Q16670 478 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 DENND1BQ6P3S1 775 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 SLC27A1Q6PCB7 646 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 LCLAT1Q6UWP7 414 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 LRRC31Q6UY01 552 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 LIMS2Q7Z4I7 341 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 NME8Q8N427 588 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 CCHCR1Q8TD31 782 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 STK32AQ8WU08 396 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 NKD2Q969F2 451 aaPredicted RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 SNF8Q96H20 258 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 HPDLQ96IR7 371 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 SLITRK1Q96PX8 696 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 ROPN1BQ9BZX4 212 aaPredicted RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 ELOVL4Q9GZR5 314 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 ZMYND15Q9H091 742 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 ROPN1Q9HAT0 212 aaPredicted RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 DPP3Q9NY33 737 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 CNTN3Q9P232 1028 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 POLIQ9UNA4 740 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 RANBP2P49792 3224 aaKnown RBP11.34□□□□□ -0.59
USP4-214ENST00000491791 GRIN2DO15399 1336 aa11.34□□□□□ -0.59
USP4-214ENST00000491791 A0A1W2PPC1 479 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 EIF3HO15372 352 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP4-214ENST00000491791 ADCY6O43306 1168 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 TJP3O95049 919 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 VTNP04004 478 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 KRT7P08729 469 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 SMIM10L2AP0DMW4 78 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 SMIM10L2BP0DMW5 78 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms