RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CNNM4Q6P4Q7 775 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 UNC13DQ70J99 1090 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 SV2AQ7L0J3 742 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 GPR65Q8IYL9 337 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 SYCP3Q8IZU3 236 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 GPR161Q8N6U8 529 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 SECISBP2LQ93073 1101 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 BICD1Q96G01 975 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 NTPCRQ9BSD7 190 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 TCHPQ9BT92 498 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 TRIM9Q9C026 710 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 ETNK1Q9HBU6 452 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 HEBP1Q9NRV9 189 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 PRMT7Q9NVM4 692 aaPredicted RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 ZSCAN32Q9NX65 697 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 SNTG2Q9NY99 539 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 DNMT3BQ9UBC3 853 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 NDRG2Q9UN36 371 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 EXOC7Q9UPT5 735 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 USP20Q9Y2K6 914 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 PCDHGA2Q9Y5H1 932 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 OBSL1O75147 1896 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 THADAQ6YHU6 1953 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 A0A1B0GUA9 196 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 K7ENM7 598 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 PTGESO14684 152 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 SLC16A4O15374 487 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 LETM1O95202 739 aaPredicted RBP9.47□□□□□ -0.89
USP4-213ENST00000488520 GCNT3O95395 438 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 THP07101 528 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 MAPTP10636 758 aaKnown RBP9.47□□□□□ -0.89
USP4-213ENST00000488520 SPEM2Q0P670 501 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 STIM1Q13586 685 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 ALCAMQ13740 583 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 EML3Q32P44 896 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 TANGO2Q6ICL3 276 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 TAS1R3Q7RTX0 852 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 HAUS6Q7Z4H7 955 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 GRAMD1CQ8IYS0 662 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 VWA5B2Q8N398 1253 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 ZBTB44Q8NCP5 570 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 PIK3R5Q8WYR1 880 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 OSBPL6Q9BZF3 934 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 NUP62CLQ9H1M0 184 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 TBC1D7Q9P0N9 293 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 MRPS23Q9Y3D9 190 aaKnown RBP9.47□□□□□ -0.89
USP4-213ENST00000488520 CFAP47Q6ZTR5 3102 aa9.47□□□□□ -0.89
USP4-213ENST00000488520 CEP192Q8TEP8 1941 aa9.46□□□□□ -0.89
USP4-213ENST00000488520 I3L4J1 428 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 NCAM2O15394 837 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 LZTS3O60299 673 aaPredicted RBP9.46□□□□□ -0.9
USP4-213ENST00000488520 LILRB5O75023 590 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 RECQL4O94761 1208 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 RHOP08100 348 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 SDHBP21912 280 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 MTAPQ13126 283 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 PNOCQ13519 176 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 PRPF4BQ13523 1007 aaKnown RBP9.46□□□□□ -0.9
USP4-213ENST00000488520 GRM2Q14416 872 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 SLC5A9Q2M3M2 681 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 FAM26FQ5R3K3 315 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 RSPO2Q6UXX9 243 aaPredicted RBP9.46□□□□□ -0.9
USP4-213ENST00000488520 ZNF852Q6ZMS4 543 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 ZNF720Q7Z2F6 126 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 SFR1Q86XK3 245 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 ZSCAN1Q8NBB4 408 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 LRRC15Q8TF66 581 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 CLDN23Q96B33 292 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 DNAJC19Q96DA6 116 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 PRIMPOLQ96LW4 560 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 GSDMAQ96QA5 445 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 ACCSQ96QU6 501 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 ADPGKQ9BRR6 497 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 NFKBIZQ9BYH8 718 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 EPC1Q9H2F5 836 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 TMEM206Q9H813 350 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 GMEB2Q9UKD1 530 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 GDAQ9Y2T3 454 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 DYRK1BQ9Y463 629 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 CDY1Q9Y6F8 540 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.46□□□□□ -0.9
USP4-213ENST00000488520 CACNA1GO43497 2377 aa9.46□□□□□ -0.9
USP4-213ENST00000488520 LAMA1P25391 3075 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 KIAA1549LQ6ZVL6 1849 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 USP24Q9UPU5 2620 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 PRR5-ARHGAP8B1AHC4 643 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 ACKR2O00590 384 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 STAU1O95793 577 aaKnown RBP9.45□□□□□ -0.9
USP4-213ENST00000488520 PRKCBP05771 671 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 CEBPBP17676 345 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 TGM1P22735 817 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 TKTP29401 623 aaKnown RBP9.45□□□□□ -0.9
USP4-213ENST00000488520 CASP1P29466 404 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 NMT1P30419 496 aaKnown RBP9.45□□□□□ -0.9
USP4-213ENST00000488520 HOXA9P31269 272 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 PPP1R2P41236 205 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 MAGEA9P43362 315 aa9.45□□□□□ -0.9
USP4-213ENST00000488520 LIG4P49917 911 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms