RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 CHST7Q9NS84 486 aa21.52■■□□□ 1.03
HPS3-206ENST00000486530 SNTG2Q9NY99 539 aa21.52■■□□□ 1.03
HPS3-206ENST00000486530 CYTH4Q9UIA0 394 aa21.52■■□□□ 1.03
HPS3-206ENST00000486530 KIAA1257Q9ULG3 409 aa21.52■■□□□ 1.03
HPS3-206ENST00000486530 SCN1AP35498 2009 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 SIGLEC16A6NMB1 481 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 AOC2O75106 756 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 MYL3P08590 195 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 CAPN2P17655 700 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 KRT17Q04695 432 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 EIF2AQ9BY44 585 aaKnown RBP21.51■■□□□ 1.03
HPS3-206ENST00000486530 GABRQQ9UN88 632 aa21.51■■□□□ 1.03
HPS3-206ENST00000486530 F8VP50 259 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 M0QYV0 167 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 GAS8O95995 478 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 KRT3P12035 628 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 NDST1P52848 882 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 COPS2P61201 443 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 PSMC1P62191 440 aaKnown RBP21.5■■□□□ 1.03
HPS3-206ENST00000486530 NFX1Q12986 1120 aaKnown RBP21.5■■□□□ 1.03
HPS3-206ENST00000486530 NOGQ13253 232 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 SNX1Q13596 522 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 CCNG2Q16589 344 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 DNAJB3Q8WWF6 145 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 ART4Q93070 314 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 HEXIM2Q96MH2 286 aaKnown RBP21.5■■□□□ 1.03
HPS3-206ENST00000486530 CPXM1Q96SM3 734 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 SYNCQ9H7C4 482 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 DDX56Q9NY93 547 aaKnown RBP21.5■■□□□ 1.03
HPS3-206ENST00000486530 ATP8A1Q9Y2Q0 1164 aa21.5■■□□□ 1.03
HPS3-206ENST00000486530 HMGB1P1B2RPK0 211 aaPredicted RBP21.49■■□□□ 1.03
HPS3-206ENST00000486530 GOLGA8SH3BPF8 625 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 KRT1P04264 644 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 PTK6Q13882 451 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 HIC1Q14526 733 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ZNF268Q14587 947 aaPredicted RBP21.49■■□□□ 1.03
HPS3-206ENST00000486530 XYLT1Q86Y38 959 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 BEST2Q8NFU1 509 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ATG4AQ8WYN0 398 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ATP6V1G3Q96LB4 118 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 SLITRK1Q96PX8 696 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 NT5C1AQ9BXI3 368 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 HEMGNQ9BXL5 484 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 TRIM6Q9C030 488 aaPredicted RBP21.49■■□□□ 1.03
HPS3-206ENST00000486530 TMBIM4Q9HC24 238 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 WHRNQ9P202 907 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 MYZAPP0CAP1 466 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 PTPN7P35236 360 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 GABRB2P47870 512 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 BEX3Q00994 111 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ZNF844Q08AG5 666 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 CALCOCO2Q13137 446 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 SNX17Q15036 470 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 STILQ15468 1287 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ZBTB6Q15916 424 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 POLNQ7Z5Q5 900 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 LRRC52Q8N7C0 313 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 ATL2Q8NHH9 583 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 PPP1R13LQ8WUF5 828 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 CNTN3Q9P232 1028 aa21.49■■□□□ 1.03
HPS3-206ENST00000486530 R3HDM2Q9Y2K5 976 aaKnown RBP21.49■■□□□ 1.03
HPS3-206ENST00000486530 C17orf102A2RUQ5 167 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 ERICH4A6NGS2 130 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 TREHO43280 583 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 ERBB2P04626 1255 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 PSMA2P25787 234 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 GPD2P43304 727 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 APLP1P51693 650 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 PMS2P54278 862 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 EIF3BP55884 814 aaKnown RBP21.48■■□□□ 1.03
HPS3-206ENST00000486530 CAP1Q01518 475 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 PDCLQ13371 301 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 ODF2Q5BJF6 829 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 ZFYVE27Q5T4F4 411 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 RNF25Q96BH1 459 aaPredicted RBP21.48■■□□□ 1.03
HPS3-206ENST00000486530 ZMAT2Q96NC0 199 aaKnown RBP21.48■■□□□ 1.03
HPS3-206ENST00000486530 CREBZFQ9NS37 354 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 TJP2Q9UDY2 1190 aa21.48■■□□□ 1.03
HPS3-206ENST00000486530 GNAT1P11488 350 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 AKR1A1P14550 325 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 TCF4P15884 667 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 RFC1P35251 1148 aaPredicted RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 FLT3LGP49771 235 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 FSCN1Q16658 493 aaKnown RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 LCLAT1Q6UWP7 414 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 ALKAL1Q6UXT8 129 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 LEKR1Q6ZMV7 388 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 TRIB2Q92519 343 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 CCDC114Q96M63 670 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 MIS12Q9H081 205 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 PABPC3Q9H361 631 aaKnown RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 NXF3Q9H4D5 531 aaKnown RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 ASIC3Q9UHC3 531 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 PIN4Q9Y237 131 aaKnown RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 SHOX2O60902 331 aaPredicted RBP21.47■■□□□ 1.03
HPS3-206ENST00000486530 RECQL4O94761 1208 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 TJP3O95049 919 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 SKOR1P84550 965 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 SLMAPQ14BN4 828 aa21.47■■□□□ 1.03
HPS3-206ENST00000486530 ATP13A4Q4VNC1 1196 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms