RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FAM189A1O60320 539 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 S1PR4O95977 384 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ADRB2P07550 413 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 WEE2P0C1S8 567 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 TRIM49P0CI25 452 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 TRIM49CP0CI26 452 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 MYL4P12829 197 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 GNL1P36915 607 aaPredicted RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 CASP4P49662 377 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 SLC8A3P57103 927 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 RBM10P98175 930 aaKnown RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 PTK2Q05397 1052 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 DLX2Q07687 328 aaPredicted RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 RAB33AQ14088 237 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ZBTB6Q15916 424 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 CTC1Q2NKJ3 1217 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 PABPC1LQ4VXU2 614 aaKnown RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 ARHGAP15Q53QZ3 475 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 WSCD1Q658N2 575 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 KRT39Q6A163 491 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 RTL10Q7L3V2 364 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 SCN4BQ8IWT1 228 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ADHFE1Q8IWW8 467 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ADSSL1Q8N142 457 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 GJD3Q8N144 294 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 TOP6BLQ8N6T0 577 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ZSWIM2Q8NEG5 633 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 VN1R2Q8NFZ6 395 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 OR5B17Q8NGF7 314 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 SPPL2BQ8TCT7 592 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 PARD3BQ8TEW8 1205 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 C2orf15Q8WU43 125 aaKnown RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 EEF2KMTQ96G04 330 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 CEP63Q96MT8 703 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 CLSTN3Q9BQT9 956 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 CORO1BQ9BR76 489 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 VN1R3Q9BXE9 311 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 KCTD10Q9H3F6 313 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP40-216ENST00000485943 ASAH2Q9NR71 780 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 EHD2Q9NZN4 543 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 AFF4Q9UHB7 1163 aaKnown RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 MAFFQ9ULX9 164 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 MRPS23Q9Y3D9 190 aaKnown RBP8.6□□□□□ -1.03
USP40-216ENST00000485943 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP40-216ENST00000485943 CHD7Q9P2D1 2997 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 VWA8A3KMH1 1905 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ANO9A1A5B4 782 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 TRIM49BA6NDI0 452 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 LRRIQ3A6PVS8 624 aaPredicted RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 TNFRSF10AO00220 468 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 PPEF2O14830 753 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ATP9BO43861 1147 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 RFPL2O75678 378 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 AKAP3O75969 853 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 FGF19O95750 216 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 GLP2RO95838 553 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 C1RP00736 705 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 PDGFRBP09619 1106 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 OR4Q2P0C623 313 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ALADP13716 330 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ATF2P15336 505 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 PTPN2P17706 415 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 FSHRP23945 695 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 GTF2H1P32780 548 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 GRIK1P39086 918 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 GCLMP48507 274 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 MYL6P60660 151 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 RPL10AP62906 217 aaKnown RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 TWF1Q12792 350 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 SMAD2Q15796 467 aaKnown RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 NFIL3Q16649 462 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 CCDC183Q5T5S1 534 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ANKRD40Q6AI12 368 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 SLC8B1Q6J4K2 584 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 TMEM184AQ6ZMB5 413 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 GRASPQ7Z6J2 395 aaPredicted RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 RNF168Q8IYW5 571 aaPredicted RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 TTC39CQ8N584 583 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 LEMD2Q8NC56 503 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 TTC16Q8NEE8 873 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 SPATA18Q8TC71 538 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 SLC22A17Q8WUG5 538 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 TAF4BQ92750 862 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 MFSD14AQ96MC6 490 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 SRRTQ9BXP5 876 aaKnown RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 PRKD2Q9BZL6 878 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 TMEM8AQ9HCN3 771 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 ANO10Q9NW15 660 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 CLEC1BQ9P126 229 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 FBXW11Q9UKB1 542 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 MAGED2Q9UNF1 606 aaPredicted RBP8.59□□□□□ -1.03
USP40-216ENST00000485943 PLXNA3P51805 1871 aa8.59□□□□□ -1.03
USP40-216ENST00000485943 CLUHO75153 1309 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CHD9Q3L8U1 2897 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 WDR27A2RRH5 827 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 BECN2A8MW95 431 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 OAZ2O95190 189 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms