RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 HMGXB4Q9UGU5 601 aa12.65□□□□□ -0.38
HPS4-214ENST00000485842 PCDHB5Q9Y5E4 795 aa12.65□□□□□ -0.38
HPS4-214ENST00000485842 DENND4AQ7Z401 1863 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 MYBPHLA2RUH7 354 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 P4HA2O15460 535 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 FAM163BP0C2L3 166 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 BMP1P13497 986 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 NDST1P52848 882 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 SMARCB1Q12824 385 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 MAN2A1Q16706 1144 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 ZSCAN23Q3MJ62 389 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 SPATA2LQ8IUW3 424 aaPredicted RBP12.64□□□□□ -0.39
HPS4-214ENST00000485842 SPPL2BQ8TCT7 592 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 C2orf15Q8WU43 125 aaKnown RBP12.64□□□□□ -0.39
HPS4-214ENST00000485842 MYLPFQ96A32 169 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 NECTIN4Q96NY8 510 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 NT5C1BQ96P26 610 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 PKMYT1Q99640 499 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 TUBGCP2Q9BSJ2 902 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 RHOBTB2Q9BYZ6 727 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 CYP3A43Q9HB55 503 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 FANCLQ9NW38 375 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 HCFC1R1Q9NWW0 138 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 TAB2Q9NYJ8 693 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 GCNT4Q9P109 453 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 MAFFQ9ULX9 164 aa12.64□□□□□ -0.39
HPS4-214ENST00000485842 CLUHO75153 1309 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 DOCK6Q96HP0 2047 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 PMM2O15305 246 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 PTPN1P18031 435 aaKnown RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 EEF1GP26641 437 aaKnown RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 ALDH1A3P47895 512 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 NTHL1P78549 312 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 CYP27A1Q02318 531 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 PLD1Q13393 1074 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 CUL2Q13617 745 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 MAPRE1Q15691 268 aaKnown RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 TCP11X2Q5H9J9 407 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 CDKAL1Q5VV42 579 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 CYP26C1Q6V0L0 522 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 C4orf50Q6ZRC1 276 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 RTL10Q7L3V2 364 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 GRASPQ7Z6J2 395 aaPredicted RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 ACOT1Q86TX2 421 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 SCN4BQ8IWT1 228 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 ELMOD1Q8N336 334 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 FAM200AQ8TCP9 573 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 ADAMTS19Q8TE59 1207 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 NECAB3Q96P71 396 aaPredicted RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 CRACR2AQ9BSW2 395 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 FUCA2Q9BTY2 467 aa12.63□□□□□ -0.39
HPS4-214ENST00000485842 INTS2Q9H0H0 1204 aaKnown RBP12.63□□□□□ -0.39
HPS4-214ENST00000485842 PTPRDP23468 1912 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 CILPO75339 1184 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 HAPLN1P10915 354 aaPredicted RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 TRIM21P19474 475 aaKnown RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 CYP2F1P24903 491 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 TUFMP49411 452 aaKnown RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 GPR15P49685 360 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 ZNF165P49910 485 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 EPHB3P54753 998 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 INCA1Q0VD86 236 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 VEPH1Q14D04 833 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 VWA3BQ502W6 1294 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 ZNF394Q53GI3 561 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 IQCEQ6IPM2 695 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 FAM171BQ6P995 826 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 GBP6Q6ZN66 633 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 GET4Q7L5D6 327 aaPredicted RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 UNC93AQ86WB7 457 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 ARHGEF19Q8IW93 802 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 PPM1KQ8N3J5 372 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 B3GALNT2Q8NCR0 500 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 EHBP1Q8NDI1 1231 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 ANKRD20A12PQ8NF67 263 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 LMO3Q8TAP4 145 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 MYCBPAPQ8TBZ2 947 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 PCED1BQ96HM7 432 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 RPGRIP1Q96KN7 1286 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 TNIP3Q96KP6 325 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 ZNF512Q96ME7 567 aaPredicted RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 TWNKQ96RR1 684 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 CORO1BQ9BR76 489 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 MED10Q9BTT4 135 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 PHF7Q9BWX1 381 aaPredicted RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 NDST4Q9H3R1 872 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 CISHQ9NSE2 258 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 FAM49BQ9NUQ9 324 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 CEP72Q9P209 647 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 DNMT3BQ9UBC3 853 aaKnown RBP12.62□□□□□ -0.39
HPS4-214ENST00000485842 HSFX1Q9UBD0 423 aa12.62□□□□□ -0.39
HPS4-214ENST00000485842 BECN2A8MW95 431 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 CLDN5O00501 218 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 PAPLNO95428 1278 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 TPM2P07951 284 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 POU2F2P09086 479 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 CCDC130P13994 396 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 ATF6P18850 670 aa12.61□□□□□ -0.39
HPS4-214ENST00000485842 CDK11BP21127 795 aaKnown RBP12.61□□□□□ -0.39
HPS4-214ENST00000485842 BDNFP23560 247 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms