RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PANK4Q9NVE7 773 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ITGA11Q9UKX5 1188 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 AGAP1Q9UPQ3 857 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SMG5Q9UPR3 1016 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PCDHB5Q9Y5E4 795 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 OTOL1A6NHN0 477 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 KIAA0391O15091 583 aaKnown RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 STX6O43752 255 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PRPF6O94906 941 aaKnown RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ITGB3P05106 788 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 STAT6P42226 847 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CXCL12P48061 93 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TNK2Q07912 1038 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PUM1Q14671 1186 aaKnown RBP eCLIP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 VEPH1Q14D04 833 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 NFE2Q16621 373 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SOWAHAQ2M3V2 549 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DGKKQ5KSL6 1271 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FAM171BQ6P995 826 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 EPM2AIP1Q7L775 607 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 OSTM1Q86WC4 334 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TMEM86AQ8N2M4 240 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SYNPOQ8N3V7 929 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CSGALNACT2Q8N6G5 542 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GPR161Q8N6U8 529 aaKnown RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CELF5Q8N6W0 485 aaKnown RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RIN3Q8TB24 985 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 USP13Q92995 863 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TMEM206Q9H813 350 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PDE11AQ9HCR9 933 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HPS4Q9NQG7 708 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RBM12Q9NTZ6 932 aaKnown RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 INTS13Q9NVM9 706 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 C2orf42Q9NWW7 574 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ABI2Q9NYB9 513 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RBAKQ9NYW8 714 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CCL26Q9Y258 94 aa13.18□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PTPRJQ12913 1337 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GOLGA8IPA6NC78 632 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GOLGA8JA6NMD2 632 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DPYSL4O14531 572 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PPP6R2O75170 966 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TADA3O75528 432 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 NOL4O94818 638 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CSH1P0DML2 217 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CSH2P0DML3 217 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 IDEP14735 1019 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DDX6P26196 483 aaKnown RBP eCLIP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GPR15P49685 360 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 KPNA1P52294 538 aaPredicted RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RBP5P82980 135 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 C1QBPQ07021 282 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 EHHADHQ08426 723 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 LRRC32Q14392 662 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ZNF268Q14587 947 aaPredicted RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CFAP221Q4G0U5 840 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 INTS6LQ5JSJ4 861 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DPH6Q7L8W6 267 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MON1AQ86VX9 555 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GPD1LQ8N335 351 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TOP6BLQ8N6T0 577 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ZNF507Q8TCN5 953 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FAM200AQ8TCP9 573 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TRMT2BQ96GJ1 504 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PI4K2AQ9BTU6 479 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TRIM9Q9C026 710 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SMG9Q9H0W8 520 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TNMDQ9H2S6 317 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PCIF1Q9H4Z3 704 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GKN1Q9NS71 199 aa13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DDX43Q9NXZ2 648 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TPRP12270 2363 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 EML5Q05BV3 1969 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 K7ELQ4 463 aaPredicted RBP13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TRDMT1O14717 391 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TGFB1I1O43294 461 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HRO43593 1189 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HUS1O60921 280 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PRPF40AO75400 957 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CYP2F1P24903 491 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 LHX1P48742 406 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TSPY1Q01534 308 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DMWDQ09019 674 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PPP2R5DQ14738 602 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PON2Q15165 354 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CCDC142Q17RM4 750 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ITPRIPL2Q3MIP1 535 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TMEM196Q5HYL7 178 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TXNDC8Q6A555 127 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 Q6ZS52 159 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CCDC65Q8IXS2 484 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SYCP3Q8IZU3 236 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PDILTQ8N807 584 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MAB21L3Q8N8X9 362 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 OR5B17Q8NGF7 314 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 KBTBD7Q8WVZ9 684 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HPS3Q969F9 1004 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FUBP3Q96I24 572 aaKnown RBP eCLIP13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HINFPQ9BQA5 517 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MTMR12Q9C0I1 747 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms