RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SMARCB1Q12824 385 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 FZD5Q13467 585 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 TAF12Q16514 161 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 ZNF852Q6ZMS4 543 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 DEPDC1BQ8WUY9 529 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 DNASE1L2Q92874 299 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 PI4K2AQ9BTU6 479 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 KIAA1586Q9HCI6 787 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 PCDHB5Q9Y5E4 795 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 GPR179Q6PRD1 2367 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 MYH10P35580 1976 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 CACNA1AO00555 2505 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 A0A1B0GVL5 298 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 MED19A0JLT2 244 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 ACTN4O43707 911 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 DLATP10515 647 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 CYP4F8P98187 520 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 MYO1EQ12965 1108 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 SNRNP35Q16560 246 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 DUOXA2Q1HG44 320 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 ARHGAP15Q53QZ3 475 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 GPR158Q5T848 1215 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 HS2ST1Q7LGA3 356 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 DGLUCYQ7Z3D6 616 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 OSTM1Q86WC4 334 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 WDR49Q8IV35 697 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 YAF2Q8IY57 180 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 ADGRF2Q8IZF7 708 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 ZNF687Q8N1G0 1237 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 TMEM86AQ8N2M4 240 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 STKLD1Q8NE28 680 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 LEO1Q8WVC0 666 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 IRF7Q92985 503 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 RSPRY1Q96DX4 576 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 SPATA32Q96LK8 384 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 GCNAQ96QF7 691 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 NELL2Q99435 816 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 TRPV4Q9HBA0 871 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 GDAP2Q9NXN4 497 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 PCDHGA2Q9Y5H1 932 aa16.88■□□□□ 0.29
CCDC88B-205ENST00000472524 PVALEFA0A1B0GWK0 134 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 ZNF263O14978 683 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 HCRTO43612 131 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 PRPF40AO75400 957 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 FGF19O95750 216 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 PFKFB1P16118 471 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 MAGEA9P43362 315 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 RPS9P46781 194 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 GPR15P49685 360 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 KRT85P78386 507 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 MTAPQ13126 283 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 NFE2Q16621 373 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 CCDC142Q17RM4 750 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 INTS6LQ5JSJ4 861 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 MFSD6LQ8IWD5 586 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 TOP6BLQ8N6T0 577 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 XXYLT1Q8NBI6 393 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 ZBTB44Q8NCP5 570 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 ATRIPQ8WXE1 791 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 HPDLQ96IR7 371 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 FNBP1Q96RU3 617 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 ACBD6Q9BR61 282 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 MKNK1Q9BUB5 465 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 PRMT8Q9NR22 394 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 EXOC1Q9NV70 894 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 NDRG2Q9UN36 371 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 MRPS17Q9Y2R5 130 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 ZDHHC9Q9Y397 364 aa16.87■□□□□ 0.29
CCDC88B-205ENST00000472524 OTOGLQ3ZCN5 2332 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 DPYSL4O14531 572 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 NCAM2O15394 837 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 SLFN14P0C7P3 912 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 TNNI1P19237 187 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 CDC25CP30307 473 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 CYP24A1Q07973 514 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 BMT2Q1RMZ1 405 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 SOWAHAQ2M3V2 549 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 SDHAF4Q5VUM1 108 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 TRAPPC11Q7Z392 1133 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 ARID3BQ8IVW6 561 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 NELL1Q92832 810 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 E2F7Q96AV8 911 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 CCDC127Q96BQ5 260 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 PAGE5Q96GU1 130 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 CGRRF1Q99675 332 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 IL21Q9HBE4 155 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 ZSCAN32Q9NX65 697 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 NCDNQ9UBB6 729 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 GTF3C4Q9UKN8 822 aa16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 MAGED2Q9UNF1 606 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-205ENST00000472524 ATG2BQ96BY7 2078 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 KLRC4O43908 158 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 LILRB5O75023 590 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 CYP2F1P24903 491 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 PCSK1P29120 753 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 LHX1P48742 406 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 SNRPFP62306 86 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 PUM1Q14671 1186 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 PSMD6Q15008 389 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 KNOP1Q1ED39 458 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms