RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TREHO43280 583 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 BRAFP15056 766 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 BCAR1P56945 870 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 ANKS1BQ7Z6G8 1248 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 ATL2Q8NHH9 583 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 DDX1Q92499 740 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 HVCN1Q96D96 273 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 MROH8Q9H579 483 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 STK38LQ9Y2H1 464 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 DLEC1Q9Y238 1755 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 KIAA0100Q14667 2235 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 NCANO14594 1321 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 RASA4BC9J798 803 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 RASA4O43374 803 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 MICAL2O94851 1124 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 F7P08709 466 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 RBP3P10745 1247 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 SLFN11Q7Z7L1 901 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 WDR49Q8IV35 697 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 STKLD1Q8NE28 680 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 SPATA18Q8TC71 538 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 RXFP2Q8WXD0 754 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 SIK2Q9H0K1 926 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 PRMT7Q9NVM4 692 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 NKIRAS1Q9NYS0 192 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 LAMA3Q16787 3333 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 TJP3O95049 919 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 CALB1P05937 261 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 RDXP35241 583 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 DGKDQ16760 1214 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 ZC3H12AQ5D1E8 599 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 ZNF618Q5T7W0 954 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 FOXR2Q6PJQ5 311 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 PLEKHH3Q7Z736 793 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 NPLOC4Q8TAT6 608 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 TRIM11Q96F44 468 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 LAMA2P24043 3122 aaKnown RBP14.46□□□□□ -0.1
CCDC88A-211ENST00000471947 HMGB1P1B2RPK0 211 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 ATP2A1O14983 1001 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 CNMDO75829 334 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 RECQL4O94761 1208 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 CYP1A2P05177 515 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 SSTR1P30872 391 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 PEX5P50542 639 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 EIF3EP60228 445 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 CEP57Q86XR8 500 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 C12orf56Q8IXR9 622 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 CLEC4CQ8WTT0 213 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 SNF8Q96H20 258 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 MRPL45Q9BRJ2 306 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 TINF2Q9BSI4 451 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 GCOM2Q9BZD3 368 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 ELOVL4Q9GZR5 314 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 SDCBP2Q9H190 292 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 RASSF4Q9H2L5 321 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 DPEP3Q9H4B8 488 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM53CQ9NYF3 392 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 NEU2Q9Y3R4 380 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 NEBLO76041 1014 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 APRTP07741 180 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 DHX34Q14147 1143 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC10A6Q3KNW5 377 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 PIK3R5Q8WYR1 880 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 CAVIN3Q969G5 261 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 RPS6KC1Q96S38 1066 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 TMBIM4Q9HC24 238 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 PPP2R3BQ9Y5P8 575 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 EVPLQ92817 2033 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 POMCP01189 267 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 C11orf63Q6NUN7 778 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 PYROXD1Q8WU10 500 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 DCLK3Q9C098 648 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 PABPC3Q9H361 631 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 SAMD15Q9P1V8 674 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 NRXN2Q9P2S2 1712 aa14.45□□□□□ -0.1
CCDC88A-211ENST00000471947 MCF2LO15068 1137 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 AVILO75366 819 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 CA4P22748 312 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 HSPA9P38646 679 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 DUPD1Q68J44 220 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 TLK2Q86UE8 772 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 CNTNAP2Q9UHC6 1331 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM187AA6NFU0 413 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 GLTPD2A6NH11 291 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 KCNN4O15554 427 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 ERBB2P04626 1255 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 HOXC6P09630 235 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 UNGP13051 313 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 DESP17661 470 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 MIPP30301 263 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 DCAF6Q58WW2 860 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 GRK7Q8WTQ7 553 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 ZNF473Q8WTR7 871 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 FAF2Q96CS3 445 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 TMEM176AQ96HP8 235 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 NT5C1AQ9BXI3 368 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 TMPRSS4Q9NRS4 437 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 MEIS3P2A8K0S8 358 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 MED7O43513 233 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 SDC4P31431 198 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms