RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 EXOC3L4Q17RC7 722 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 ATG2AQ2TAZ0 1938 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CES5AQ6NT32 575 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CYP26C1Q6V0L0 522 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 GBP6Q6ZN66 633 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 GPR149Q86SP6 731 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 UNC93AQ86WB7 457 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 TTC39CQ8N584 583 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 MYCBPAPQ8TBZ2 947 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 SPPL2BQ8TCT7 592 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 TNIP3Q96KP6 325 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CRACR2AQ9BSW2 395 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 RHOBTB2Q9BYZ6 727 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 PRKD2Q9BZL6 878 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 INTS2Q9H0H0 1204 aaKnown RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CRISPLD1Q9H336 500 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 DPEP3Q9H4B8 488 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 FAM124BQ9H5Z6 455 aaPredicted RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CBX8Q9HC52 389 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CRTAC1Q9NQ79 661 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 GCNT4Q9P109 453 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 SLC27A5Q9Y2P5 690 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 PCDHB5Q9Y5E4 795 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 GRXCR2A6NFK2 248 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 LRRC10BA6NIK2 292 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PES1O00541 588 aaKnown RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CILPO75339 1184 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 LRG1P02750 347 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 POU2F2P09086 479 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CD58P19256 250 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PON1P27169 355 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 TUFMP49411 452 aaKnown RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CDR1P51861 262 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CCDC142Q17RM4 750 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ATAT1Q5SQI0 421 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PTCRAQ6ISU1 281 aaPredicted RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PHLDB3Q6NSJ2 640 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 LRSAM1Q6UWE0 723 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 C4orf50Q6ZRC1 276 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 SPATA2LQ8IUW3 424 aaPredicted RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CRYBG2Q8N1P7 616 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PPM1KQ8N3J5 372 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 B3GALNT2Q8NCR0 500 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 FEZF2Q8TBJ5 459 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 WHAMMQ8TF30 809 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 SUSD6Q92537 303 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ZNF707Q96C28 371 aaPredicted RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 PCED1BQ96HM7 432 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 FUBP3Q96I24 572 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ASB2Q96Q27 587 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ARID3AQ99856 593 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 NT5C1AQ9BXI3 368 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 VPS16Q9H269 839 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ABCB6Q9NP58 842 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CISHQ9NSE2 258 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 ABI2Q9NYB9 513 aaPredicted RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 HMGXB4Q9UGU5 601 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 LIMA1Q9UHB6 759 aaKnown RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 USP15Q9Y4E8 981 aaPredicted RBP12.74□□□□□ -0.37
VPS13D-204ENST00000469054 INSL5Q9Y5Q6 135 aa12.74□□□□□ -0.37
VPS13D-204ENST00000469054 CCL16O15467 120 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 XYLBO75191 536 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 HAPLN1P10915 354 aaPredicted RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 ATP1A3P13637 1013 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 SLC9A1P19634 815 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 ALDH1A3P47895 512 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 KCNQ1P51787 676 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 COPB1P53618 953 aaKnown RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 YWHAEP62258 255 aaKnown RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 GCNT1Q02742 428 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 TWF1Q12792 350 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 PLD1Q13393 1074 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 ORC1Q13415 861 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 SMAD2Q15796 467 aaKnown RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 MGAT5BQ3V5L5 792 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 CFAP221Q4G0U5 840 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 MDH1BQ5I0G3 518 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 TRIM65Q6PJ69 517 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 RRAGAQ7L523 313 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 ACOT1Q86TX2 421 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 LUZP1Q86V48 1076 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 ARHGEF19Q8IW93 802 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 TTC9BQ8N6N2 239 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 FAM200AQ8TCP9 573 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 SMG7Q92540 1137 aaKnown RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 MYLPFQ96A32 169 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 RIPOR3Q96MK2 946 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 NECTIN4Q96NY8 510 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 TWNKQ96RR1 684 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 SEPT5Q99719 369 aaPredicted RBP12.73□□□□□ -0.37
VPS13D-204ENST00000469054 LPIN3Q9BQK8 851 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 TSPY26PQ9H489 355 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 PIDD1Q9HB75 910 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 CDH22Q9UJ99 828 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 FAM50BQ9Y247 325 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 YIPF1Q9Y548 306 aa12.73□□□□□ -0.37
VPS13D-204ENST00000469054 EYSQ5T1H1 3165 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 IL9P15248 144 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 TRIM21P19474 475 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms